Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02023 ATGTTACAGAGGTTATTTGAAAATTATTGGATATACTTGACATCTAAAGATATTTTAAGATATGAGAAAGCATATGTGAACTCATGTTTCCAGAATCACACTCTTTTCCACAAGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGTTGGAAACTCTAGTGCAGAACTTCTTGCCACTTATTGTGATAACATTCTCAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTAAAGCTGCTCGCCTATATTAGTGACAAAGACTTGTTTGCTGAGTTCTACAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTGACAAGAGTGTCGATGATGATCATGAGAGAAGTATTTTGACCAAATTGAAGCAACAGTGTGGAGGACAGTTTACCTCGAAGATGGAAGGAATGGTTACAAATTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAACAATAATCCTAATGCAGACCCTGGAATAGACTTGACAGTTACAGTTCTAACTACTGGCTTCTGGCCTAGTTATAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATCATGGTTAGTCAAGCTGATGATGTTGCTGGAATCATATCTTCTAAAGCCGGCCTGCAGTATGTTGGACCTGACTTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTATTTGAAACTGCTTTACGAGACTTCAAGGCGCAGTTGGAGGAAGATCCAATTGTTCATAGGCACTTGTCATCGTTGTATGACACCCTTTTGGAGCAGAATCTTTATAGGTTGATTGAACCATTTTCAAGGGTTGAGATTGCACATATTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCACCTTTCTGTATCTTCTATCGGATCTGTTCCCGCGCCTGTTGAAGTTGTCGAATCCTTACCAGTTAAAATATACACAATGTCACACAAACATCAAGAAGAACCTGTACAATGCTATATATGTCTTATGGAGTATGAAGATGGAGACAGCATGCAAGTACTTCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGA 1143 0.3867 MLQRLFENYWIYLTSKDILRYEKAYVNSCFQNHTLFHKALKEAFEVFCNKGVVGNSSAELLATYCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSVDDDHERSILTKLKQQCGGQFTSKMEGMVTNLTLAKENQTSFEEYLNNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLYRLIEPFSRVEIAHIAEALFEVLDEIHQQSVVLSSHLSVSSIGSVPAPVEVVESLPVKIYTMSHKHQEEPVQCYICLMEYEDGDSMQVLPCHHEFHTTCIDK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02023 380 Gene3D Cullin Repeats 58 170 - -
Vifa2g02023 380 Gene3D Cullin Repeats 17 57 - -
Vifa2g02023 380 Gene3D Ring Box Chain A; domain 5 173 204 - -
Vifa2g02023 380 ProSiteProfiles Zinc finger RING-type profile. 351 380 IPR001841 -
Vifa2g02023 380 SUPERFAMILY RING/U-box 338 380 - -
Vifa2g02023 380 Pfam PCI domain 229 297 IPR000717 -
Vifa2g02023 380 SMART cul_2 87 218 IPR016158 -
Vifa2g02023 380 SUPERFAMILY Cullin repeat-like 20 52 IPR016159 -
Vifa2g02023 380 Gene3D - 205 310 - -
Vifa2g02023 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 380 IPR013083 -
Vifa2g02023 380 Pfam RING-like zinc finger 350 378 IPR001841 -
Vifa2g02023 380 Pfam Cullin family 24 201 IPR001373 GO:0006511|GO:0031625
Vifa2g02023 380 SUPERFAMILY Cullin homology domain 55 203 IPR036317 -
Vifa2g02023 380 PANTHER CULLIN 23 202 IPR045093 -
Vifa2g02023 380 ProSiteProfiles Cullin family profile. 56 201 IPR016158 -
Vifa2g02023 380 FunFam Cullin-1 like 57 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02023 Vifa-Chr2 525575705 525578075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02023 283 380 C3H Transcription Factor Family AT5G45290 66.667 2.48e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02023 K03347 - gmx:100779134 347.051