Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02003 ATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTTTCACATGGATATCCGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGAAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGAAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGTATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGTCAAAGGAAAAAGCAAAGGCTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAGTTTTCATGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCGCACTGGTGTTGTTTATCATCACCCTAA 1314 0.398 MRELWHSIFPMVGIFHMDIRLKIGNDIQYVLNPKGTTPAEIMGICCCRTVNQNYENILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMEKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKYEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFSACGTITSAKVMRDVKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHSHWCCLSSP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02003 437 Gene3D - 226 328 IPR012677 -
Vifa2g02003 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 313 IPR000504 GO:0003723
Vifa2g02003 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 215 IPR000504 GO:0003723
Vifa2g02003 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Vifa2g02003 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 409 IPR000504 GO:0003723
Vifa2g02003 437 PANTHER RNA BINDING PROTEIN 104 422 - -
Vifa2g02003 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 222 IPR000504 GO:0003723
Vifa2g02003 437 FunFam Polyadenylate-binding protein 227 321 - -
Vifa2g02003 437 CDD RRM4_I_PABPs 338 416 - -
Vifa2g02003 437 SMART rrm1_1 340 412 IPR000504 GO:0003723
Vifa2g02003 437 SMART rrm1_1 146 218 IPR000504 GO:0003723
Vifa2g02003 437 SMART rrm1_1 237 309 IPR000504 GO:0003723
Vifa2g02003 437 FunFam Polyadenylate-binding protein 146 226 - -
Vifa2g02003 437 SUPERFAMILY RNA-binding domain, RBD 334 424 IPR035979 GO:0003676
Vifa2g02003 437 Gene3D - 116 225 IPR012677 -
Vifa2g02003 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 416 IPR000504 GO:0003723
Vifa2g02003 437 SMART rrm2_1 340 412 IPR003954 GO:0003676
Vifa2g02003 437 SMART rrm2_1 146 218 IPR003954 GO:0003676
Vifa2g02003 437 SMART rrm2_1 237 309 IPR003954 GO:0003676
Vifa2g02003 437 Gene3D - 329 424 IPR012677 -
Vifa2g02003 437 SUPERFAMILY RNA-binding domain, RBD 146 314 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02003 Vifa-Chr2 520788072 520791193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02003 143 427 Eukaryotic Initiation Factors Gene Family AT2G36660 59.298 2.62e-118 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02003 K13126 - gmx:100804671 426.017