Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02001 ATGGATAGTAACATCAAAATAAAGGGAGAAATAGAGAAGGTAAATGGGAAGGAATTAAGCTACAATGAATTTGTTGAAAGATATATGGAGAAGAACAAACCAGTGATGCTAACTGGATTAATGGACAATCATTGGAAGGCTTGCACTGATTGGGTTAACCCTAATGGAAAACCTAATCTCCAATTTTTCTCCACTCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGACTGTGATACCAGAGATTTTACTGATCAAAAAAGGGACGAGATGTTGGTTTCCGATTTCGTTCGACTTTGCTTTAAATATGAAGGTTCTGCAGTTCAGTGCAGTAATCAAATTGGTGTAAGTAATGGTGACTCTGCATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTTAGAATGAATACTTATTCCGACAGAGACCAGCAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTAAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATCTTGTGTTTGACAGGAACATGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAGTATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCTAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACATTATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGATATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAATACAGGGATGAATTTTTATGACTTCTTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTTCTGCTTTGCTACATAAATAGAAGAGATGGAAGTACAACTGGAAACTCGTCAAGAGTAGCTCAGCATTTATCCATGAATATTGGGTCTATTAGGAAGATTGCATCAGAGATGAAACATGGTTGTGGTCTAGAAGGGAATCATGACTGTGTTGTGGATATGATAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAGCATATTTAATGATACACGGGCAATCCAATTTGTTCTCTGATTCAGTGGGTGCTTCCATGGTTGATTTGGTGGATCTCGGTGTTTTGGAAGCACACACTTCTTCTCAAGTTTATGCACCTGAAGACCTCATCAAATTTATAGACAACGGCATTGCAAAACTGGACGACTTTTACATCAAGTTATCTGTACAGCATGTTGCTTGA 1476 0.3821 MDSNIKIKGEIEKVNGKELSYNEFVERYMEKNKPVMLTGLMDNHWKACTDWVNPNGKPNLQFFSTHFGSSKVQVADCDTRDFTDQKRDEMLVSDFVRLCFKYEGSAVQCSNQIGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNMKSCVYNIFDEVSDSKYPSFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTLSINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFTLANLVLLCYINRRDGSTTGNSSRVAQHLSMNIGSIRKIASEMKHGCGLEGNHDCVVDMIKTFEDPRFSKFCMQVGKAYLMIHGQSNLFSDSVGASMVDLVDLGVLEAHTSSQVYAPEDLIKFIDNGIAKLDDFYIKLSVQHVA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02001 491 Gene3D Cupin 2 288 - -
Vifa2g02001 491 SUPERFAMILY Clavaminate synthase-like 7 316 - -
Vifa2g02001 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 341 - -
Vifa2g02001 491 SMART cupin_9 124 304 IPR003347 -
Vifa2g02001 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
Vifa2g02001 491 Pfam Cupin-like domain 22 287 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02001 Vifa-Chr2 520186053 520191645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02001 9 296 Glycosyltransferase AT1G78280 24.242 1.02e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa2g02001 Cupin_8 6.2e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02001 - - gmx:100803814 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02001 2 520186053 520191645 Vifa2g02001 2 520186053 520191645 ECH