Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01998 ATGGAAGACGCAATTGATTTGTCTGGGGATGGAGGAGTCATCAAAACCATTGTGAGGAAGAGCAAGTCAGATGTTGTGGCTCCAACTGAAGATTTTCCCATTGTTGATGTTCACTATGAAGGCACGCTCGCTGATACCGGTGAAGTCTTTGACACTACACATGAAGACAACACTATATTCTCCTTTGAACTTGGAAAGGGTAGTGTTATCAAGGCTTGGGATATTGCCGTCAAAACCATGAAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCAGATTATGCATATGGTAGCGCAGGATCTCCGCCAGATATACCTCCAGATGCAACACTGGTTTTTGAAGTTGAGCTAGTTGCCTGTAGGCCACGGAAGGGCTCTACTACTGGAAGTGTTTCAGAGGAGAGGGCTAGGCTAGAGGAGCTGAAAAAGGTGGAGAGATTTCCGCCGCTAAGCCGCGCCGCGAGAGAGGAAGAGACCTTTTTTCAACCCTAA 492 0.4654 MEDAIDLSGDGGVIKTIVRKSKSDVVAPTEDFPIVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWDIAVKTMKVGEIAKITCKPDYAYGSAGSPPDIPPDATLVFEVELVACRPRKGSTTGSVSEERARLEELKKVERFPPLSRAAREEETFFQP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01998 163 Gene3D - 1 120 IPR046357 GO:0003755
Vifa2g01998 163 SUPERFAMILY FKBP-like 9 118 - -
Vifa2g01998 163 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 128 - -
Vifa2g01998 163 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 32 121 IPR001179 GO:0003755
Vifa2g01998 163 FunFam Peptidylprolyl isomerase 1 120 - -
Vifa2g01998 163 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 34 118 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01998 Vifa-Chr2 519525695 519526186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01998 5 133 Calmodulin-binding Proteins AT5G48570 35.075 3.04e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01998 K01802 - gmx:100500018 273.092