Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01991 ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTTCTTCGTCGAAAATGCATGCCAGGTTGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTCGCAAACGTTCACAAGATCTTTGGCGCAAGCAACGTGACTAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTCGCTTATGAGGCCGAAGCGCGTGTGAGGGATCCAGTTTATGGCTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAATCCAAAGGCTTCAAAAGGAGCTTGATTCTGCTAACGCTGATCTTCTCCGTTTCGCTTACAATGATCTCTCGCCTAACTCGTCTCTTCCGCCTCTTCCTCCTCTCGTTGTTCAATCTTCATTTCATCACCAACCTCAGAGACAGTTCAGTTCGAGATTCGGTATTGGTAATACTAATGTTGAAGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATAACATTAACAACACCTCTACTGAGGATATAAATGGAGGTTTAGGAGCAAGAGGAGGAGGTAATAATTTGTGA 585 0.4393 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQIQRLQKELDSANADLLRFAYNDLSPNSSLPPLPPLVVQSSFHHQPQRQFSSRFGIGNTNVEASGFYSFPYAIPWNDNINNTSTEDINGGLGARGGGNNL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01991 194 Coils Coil 89 109 - -
Vifa2g01991 194 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vifa2g01991 194 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vifa2g01991 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01991 Vifa-Chr2 517970939 517971523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01991 1 130 AS2 family AT5G63090 75.676 9.14e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g01991 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01991 - - gmx:100775922 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01991 2 517970939 517971523 Vifa2g01991 2 517970939 517971523 ECH