Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01986 ATGGGTCGGCATTCTTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCCATTACATAACCATCTTTGGTGTTGGTTGTTGGAGTTCAGTTCCCAAACTAGCTGGGTTGCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTACTTGAGACCTGATTTGAAGAGAGGAATGTTTTCACAACAAGAGGAGAATCTTATTATCACACTTCATGAAGTACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACTGATAATGAGATAAAAAACTTTTGGAATTCATGTTTGAAGAAGAGGCTAATGAAGCAAGGGATTGATCCAGCTACACATAAGCCATTCTTCAATGTTACTGAATCAGTTCTAAAGGAAGAGAATGAAAAATTATCAATGCTAATGCCGGCGCTGTCGCAACCACAAACAACTTTATGCTCATATTCAGAAGCACTTCTAATGAGTGATTTGAATTATCACTATAATATTGGTGGTTTATCTTTTACAGAAGCTTCAAGAAAAATTCTCATGAATTTGGATAAGCCATTACTTGATCCATTATGCTACAATCTTAGTGTGAGCAATTATTATTCTCAGCCTTGCCTGAGACAATTTGAACAGAATCTGTTTGGAAGTGATTCAAGCTATTTCTTCTCTTCAATGCCTTGTCTAAATAGTGCAGACAACAATAATTCAGTTTCTGAATTTGGTTCTCTTTTGGTGAATGAAAACTCATGCAATAGTTTTTCAACTATGAATGATTATCAAGGGTGTGAAATGAGCAGCAACATGATTGAAAATGCAGGTGGATTATTGTCATGGGAAGGTGAGAACAAGATTTTGGATCCTTTGTTACAGTATGAAGTCAATGCGACGTCACTGTCAGAATATCTAAGTAACGAAGCTAATTTTGATGTATTTCAGCATTTATGA 972 0.3601 MGRHSCSLKQKLRKGLWSPEEDEKLFHYITIFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEENLIITLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKRLMKQGIDPATHKPFFNVTESVLKEENEKLSMLMPALSQPQTTLCSYSEALLMSDLNYHYNIGGLSFTEASRKILMNLDKPLLDPLCYNLSVSNYYSQPCLRQFEQNLFGSDSSYFFSSMPCLNSADNNNSVSEFGSLLVNENSCNSFSTMNDYQGCEMSSNMIENAGGLLSWEGENKILDPLLQYEVNATSLSEYLSNEANFDVFQHL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01986 323 Gene3D - 68 143 - -
Vifa2g01986 323 PANTHER MYB DOMAIN PROTEIN 55 1 251 - -
Vifa2g01986 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa2g01986 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa2g01986 323 CDD SANT 70 109 IPR001005 -
Vifa2g01986 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa2g01986 323 FunFam Myb transcription factor 11 67 - -
Vifa2g01986 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa2g01986 323 CDD SANT 17 61 IPR001005 -
Vifa2g01986 323 Gene3D - 11 67 - -
Vifa2g01986 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vifa2g01986 323 FunFam Transcription factor MYB86 69 139 - -
Vifa2g01986 323 SMART sant 13 63 IPR001005 -
Vifa2g01986 323 SMART sant 66 114 IPR001005 -
Vifa2g01986 323 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vifa2g01986 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01986 Vifa-Chr2 514535212 514536451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01986 1 150 MYB Transcription Factor Family AT1G57560 73.333 2.86e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g01986 Myb_DNA-binding 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01986 K09422 - gmx:100811140 360.918