Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01983 ATGACGACCAGGTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTCAGCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGACGCGGTAACGCTGGAGGCATGCACCACCACCGGATCCTGTTCGACAAGTACCATCCAGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTTCGTAACAAATTCTATTCCCCCATTGTGAACATCGACAGGCTCGCTTCTTTGATTCCTCAAGAGGTTAAGGATAAGGCGATTAAGGAGAAGAAAGCGCCGGTTATTGATGTTACTCAGCATGGGTACTTTAAGCTTTTGGGGAAAGGGGTTTTGCCTCAGAATCAGCCTTTTGTGGTGAAGACAAAGCTGATTTCCAAGATTGCTGAGAAGAAGATTAAGGAGGCTGGTGGAGCTGTTATTCTTACTGCTTAG 444 0.4865 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDRLASLIPQEVKDKAIKEKKAPVIDVTQHGYFKLLGKGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVILTA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01983 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Vifa2g01983 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Vifa2g01983 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Vifa2g01983 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vifa2g01983 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vifa2g01983 147 Gene3D - 58 147 - -
Vifa2g01983 147 FunFam 60S ribosomal protein L27a 58 147 - -
Vifa2g01983 147 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01983 Vifa-Chr2 513145753 513146196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01983 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 83.673 7.57e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01983 K02900 - gmx:100802235 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01983 2 513145753 513146196 Vifa2g01983 2 513145753 513146196 ECH