Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01982 ATGGAATCTAAACCCGTAAACCTTAAGCTTCTCTGTAGCTACGGTGGCAAGATCCTCCCTCGATCCACCGATGGTGAACTCCGTTACGTCGGCGGTCACACCAGAGTTCTCGCCGTCGATCGTTCAATTTCGTTTTCAGAATTGATGGAGAAGCTTCGAGAATTTTGTGGCTCATCTGTGAAATTAAGGTGTCAATTACCAAAAGGCGACTTAGAAACGTTGATCTCCATCACAAACGACGAAGATTTGGCTCAAATAATCGACGAATACGATCGTGCCTCGTTGAAATTACCTCACCCGTTGAAGATCAGAGCTGTTCTTTCGCCACCAAAATCGGTCTTGAAAGTTTCTCCCGATCCGTCGTCTTTGTCGTCAAGTGCTAGTCGTTCTCCGTACAGATCACCTTATACTTCATCTGAATCTCCACCGTACGCGGCGGCGTATAGAATCGGACGTTACAGTCGCTCGCCGCGGGCGCCGGTAGGGTACTCGTTCGGCGCCAGGAATGGATCGGCGAAAGCTTATTGCTACACCGGCCAGTTCGAGAGAGGCCCAAGGCCCTTGTATTATGGGCCTCGTTACAATAATTACTGCCATTAA 600 0.4917 MESKPVNLKLLCSYGGKILPRSTDGELRYVGGHTRVLAVDRSISFSELMEKLREFCGSSVKLRCQLPKGDLETLISITNDEDLAQIIDEYDRASLKLPHPLKIRAVLSPPKSVLKVSPDPSSLSSSASRSPYRSPYTSSESPPYAAAYRIGRYSRSPRAPVGYSFGARNGSAKAYCYTGQFERGPRPLYYGPRYNNYCH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01982 199 CDD PB1_UP2 11 107 - -
Vifa2g01982 199 SMART PB1_new 22 108 IPR000270 GO:0005515
Vifa2g01982 199 SUPERFAMILY CAD & PB1 domains 24 113 - -
Vifa2g01982 199 Pfam PB1 domain 25 96 IPR000270 GO:0005515
Vifa2g01982 199 Gene3D - 28 107 - -
Vifa2g01982 199 PANTHER OS05G0427100 PROTEIN-RELATED 3 126 - -
Vifa2g01982 199 MobiDBLite consensus disorder prediction 115 141 - -
Vifa2g01982 199 MobiDBLite consensus disorder prediction 112 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01982 Vifa-Chr2 512920569 512921256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01982 3 92 MAP Kinase Kinase Kinase AT5G57610 46.667 8.31e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01982 - - gmx:100810563 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01982 2 512920569 512921256 Vifa2g01982 2 512920569 512921256 ECH
Vifa2g01982 2 512920569 512921256 Vifa2g01982 2 512920569 512921256 PCT