Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01970 ATGGAATCTGGACCTAGGCTCTATTCTTTTGATCACTTCAATTTTGACCCTAAATGGTTCATTGATCCTAAGCATCTTTATGTTGGACCTAGGATTGGTGAAGGTGCTCATGCTAAAGTCTATGAAGGAAAATATAAAAACCAGATTGTTGCTATTAAAATTGTACATAAAGGAGACTCTACAGAAGAAATTGCCAAGAGAGAAGATCGGTTTGCAAGGGAGGTAGCTATGTTGTCTAGAGTGCAACATAAGAACTTGGTGAAGTTTATCGGTGCCTGCAAAGAGCCAGTAATGGTGATAGTCACTGAGCTGTTATCAGGTGGAACGCTGCGCAAGTATTTGCTTAACATGCGTCCTCAATGTTTGGATACGCATGTTGCCATTGGTTTTGCACTCGATATTGCACGTGCTATGGAGTGCCTGCATTCTCACGGGATCATACACCGTGATCTTAAACCTGATAACTTGCTATTGACGGAAGACCATGGATCAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAGTCTTTAACTGAGATGATGACGGCTGAAACGGGAACATACCGTTGGATGGCTCCAGAGTTATACAGTACTGTCACACTGAGGCAAGGGGAGAAGAAGCATTACAACCATAAAGTCGATGCTTATAGCTTTGCGATTGTGTTTTGGGAGCTCTTACACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTTCAAGCAGCATATGCTGCTGCCTTCAAGAATGTAAGGCCGAGTGCAGATCATCTCCCTGAGGAACTGGCTATAATTCTTACTTCGTGCTGGCAAGAGGATGCAAATGCCCGACCCAACTTCACTCAGATAATCCAAATGCTAATAAATTATCTTTACACCGTTTCGCCTCCTGGGCCTGCAATTCCTTCAAGAATATTCACTTCTGAGAACACAGTGTTGCCACCTGAGTCTCCTGGTACGAGCTCCTTAATGGCGAAACGTGATGACACTGGCGATACACCGAGAGTAAAGGACGAAATCAAGCCTATTGGTTTCCTTTGCTGTTTTAGCCAGTGTTATTAA 1059 0.4325 MESGPRLYSFDHFNFDPKWFIDPKHLYVGPRIGEGAHAKVYEGKYKNQIVAIKIVHKGDSTEEIAKREDRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPQCLDTHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDHGSVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVFWELLHNKVPFEGMSNLQAAYAAAFKNVRPSADHLPEELAIILTSCWQEDANARPNFTQIIQMLINYLYTVSPPGPAIPSRIFTSENTVLPPESPGTSSLMAKRDDTGDTPRVKDEIKPIGFLCCFSQCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01970 352 MobiDBLite consensus disorder prediction 312 326 - -
Vifa2g01970 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Vifa2g01970 352 MobiDBLite consensus disorder prediction 312 334 - -
Vifa2g01970 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Vifa2g01970 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Vifa2g01970 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vifa2g01970 352 Gene3D Transferase(Phosphotransferase) domain 1 106 294 - -
Vifa2g01970 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 286 - -
Vifa2g01970 352 CDD STKc_MAP3K-like 32 286 - -
Vifa2g01970 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vifa2g01970 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01970 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01970 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01970 Vifa-Chr2 508212624 508215520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01970 9 352 MAP Kinase Kinase Kinase AT5G50180 79.651 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa2g01970 PK_Tyr_Ser-Thr 2.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01970 - - gmx:100796593 654.055