Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01964 ATGGCACTTTCTTCCAAACTCCAACTCCCAAACCCGCCACTACACACTTTCACCACTTCCTCTTCCGCTTCACTTTCAAACTCAACAACCTTCCGTTCCAAACTAACCCTAACTCGCCTCTCTTCCTCTTTCCTCAACCCCTCCACAATCCTCCACCTCACTCCCTCCCAACGCACCAACCGTCCTTCCTCCCCCTTCACCGTCCGCGCCGCACGCGGCAAATTCGAGCGCAAGAAACCGCATCTCAACATCGGCACAATTGGCCACGTCGACCATGGCAAAACCACTCTCACTGCTGCTCTCACCATGGCCCTCGCTTCCCTCGGTAACAGCGCCCCTAAAAAGTACGACGAAATCGACGCTGCTCCCGAAGAGCGCGCTCGTGGAATTACAATTAACACTGCTACTGTTGAGTACGAGACTGAAACTCGTCACTACGCTCATGTTGATTGTCCAGGTCACGCTGATTACGTTAAGAATATGATTACCGGAGCTGCGCAAATGGACGGCGCTATCCTCGTTGTCTCCGGTGCCGATGGTCCCATGCCTCAAACTAAAGAGCACATCCTTCTCGCCAAACAGGTTGGTGTTCCGAGCGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGACGATGAGGAGCTTCTTGAACTAGTGGAGCTTGAAGTTCGGGAGCTTCTCACATCTTATGAGTTTCCTGGAGATGACATTCCGATTATCTCTGGTTCAGCGCTATTGGCATTGGAAGCGTTAATGGCAAACCCTGCCCTGAAACGTGGGGATAACCAGTGGGTGGATAAGATTTACCAGCTTATGGATGAAGTTGATAAGTATATTCCGATTCCTCAACGTCAGGTGGAACTCCCCTTTTTGCTTGCCATTGAGGATGTGTTTTCAATCACCGGTCGTGGAACAGTTGCCACTGGGAGAATTGAAAGAGGGACTGTTAAAGTTGGGGATGTTGTTGACCTTGTTGGTTTGAGGGAAACAAGGAACACTACAGTGACTGGTGTAGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCTGGTGACAATGTGGGGTTGTTGTTGAGAGGAATTCAAAAGATCGATATTCAAAGAGGGATGGTTTTGGCTAAGCCGGGAACCATTACTCCTCACTCCAAGTTTAGTGCTATTGTGTATGTTTTAAAGAAGGAAGAAGGTGGAAGACACTCGCCGTTCTTTGCCGGTTATAGGCCTCAATTTTACATGAGGACTACAGATGTTACTGGAAAAGTTACATCTATTATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTGAAGATTGTGGTGGAACTCATTGTTGCCGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTAA 1437 0.483 MALSSKLQLPNPPLHTFTTSSSASLSNSTTFRSKLTLTRLSSSFLNPSTILHLTPSQRTNRPSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLTSYEFPGDDIPIISGSALLALEALMANPALKRGDNQWVDKIYQLMDEVDKYIPIPQRQVELPFLLAIEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKIVVELIVAVAIEQGMRFAIREGGKTVGAGVIGAIIE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01964 478 FunFam Elongation factor Tu 70 282 - -
Vifa2g01964 478 SUPERFAMILY Translation proteins 284 380 IPR009000 -
Vifa2g01964 478 Gene3D - 71 282 IPR027417 -
Vifa2g01964 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 298 IPR027417 -
Vifa2g01964 478 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 79 283 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 NCBIfam small GTP-binding protein domain 83 217 IPR005225 GO:0005525
Vifa2g01964 478 Gene3D Translation factors 417 477 - -
Vifa2g01964 478 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 120 135 IPR031157 -
Vifa2g01964 478 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 377 477 IPR009001 -
Vifa2g01964 478 Pfam Elongation factor Tu C-terminal domain 377 476 IPR004160 -
Vifa2g01964 478 Pfam Elongation factor Tu GTP binding domain 79 280 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 Gene3D Translation factors 285 413 - -
Vifa2g01964 478 CDD EF_Tu 80 282 IPR041709 -
Vifa2g01964 478 FunFam Elongation factor Tu 285 413 - -
Vifa2g01964 478 PRINTS GTP-binding elongation factor signature 163 174 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 PRINTS GTP-binding elongation factor signature 83 96 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 PRINTS GTP-binding elongation factor signature 200 209 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 PRINTS GTP-binding elongation factor signature 127 135 IPR000795 GO:0003924|GO:0005525
Vifa2g01964 478 NCBIfam elongation factor Tu 71 478 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vifa2g01964 478 Hamap Elongation factor Tu [tuf]. 70 478 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vifa2g01964 478 CDD EFTU_II 290 376 IPR033720 -
Vifa2g01964 478 CDD EFTU_III 379 473 - -
Vifa2g01964 478 Pfam Elongation factor Tu domain 2 304 372 IPR004161 GO:0005525
Vifa2g01964 478 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g01964 478 FunFam Elongation factor Tu 417 477 - -
Vifa2g01964 478 PANTHER ELONGATION FACTOR TU-RELATED 68 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01964 Vifa-Chr2 506338695 506340319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01964 77 476 Eukaryotic Initiation Factors Gene Family AT5G60390 28.829 2.09e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01964 K02358 - jre:108984280 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01964 2 506338695 506340319 Vifa2g01964 2 506338695 506340319 ECH
Vifa2g01964 2 506338695 506340319 Vifa2g01964 2 506338695 506340319 PCT