Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01963 ATGACGCTGGATTCCTCCGAACTAGACGGTGATCCTGATACTGAGTTCGCCGAAATTGATCCCGCCGGTCGATATGGCCGGTACAAGGAAGTTTTAGGGAAGGGGGCTTTCAAGAAAGTATACCGAGCTTTTGATGAATTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGTCTGATCTATTGCGAAATTCTGAGGATTTGGAGAGGCTTTACTCTGAAGTTCATTTGCTTAAGACTTTGAAGCATAAGAATATTATTAAATTTTACAATTCATGGGTTGACACCAAGACTGAGAATATTAATTTCATTACTGAAATTTTCACATCCGGTACATTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTCGTATCTTCATAGTCATAATCCACCTGTTATTCATCGAGACCTTAAGTGTGACAATATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGGTTGGCTGCCATTCTTCAACAGGCCAGTTCAGCTCACAGTGTTATAGGTACCCCTGAGTTTATGGCCCCAGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATATATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCGTATGTTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGATATCTGGAATAAAGCCAGCATCATTGGCAAAAGTAAATGATCCTGAAGTTAAAGCCTTTATAGAAAAGTGTATTGCTAATGTATCACAACGGTTGCCTGCAAAGGTTCTCTTGATGGATCCCTTCCTTCAGTCAGATTTTGATGGTGACAGTGTCGGTCGATCTTCGAGTTCTAGAACCCAGCATTCAGGAAATAACTTTGATAATCTACCCATTGCAAAAAGTGCCAAGGATAATTCTGTTGAGGCAAATAGGGAATTCACTGTGGAAGGCCAGAGGAGAGACGTTAATACAATATTTTTAAAACTACGAATTGCTGATTCCTCAGGCCATATTCGAAATATCCATTTCCCTTTCGATATTGGAGCAGACACTTCAGTCTCTGTTGCTAGTGAAATGGTTGAGGAATTGGAGCTTAGTGATCAAGATGTTTCAACTATTGCTATGACAATTGACTCAGAAATTCGATACCACATCCCTAGCTGGAATCCTAGTGAAACTCCCGACAATAGTTCTTACCATGATTCAGGCCATACCCCTGAAACTATGCCCGAGGCTTCTCCCATAACAAATGACTCTCCTGGCAGCCTTGCTTTGGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCTAAGGGTGTTGGTGGAAGCTCTCCATATCTGCACGGTTCTTCAAATTTGTCTCATGAAGTGGATGTGATTGCTGAGGAAGACATTTTGTTTGCAAATAGTGCGGAGAAGGAATGTGATGGGACTGCTGATTCCCCTTTCAGTGAAAGAAGTATTACATCGGACCATTTTGAAGCCGCTGGTGAAGAAGAAATATATGTAAGTTTGGAAGATTCAGAAACAGAAGACATCGATAAAATAGCTTCAAAGCTGGAAACTTTGTTGGGTATGCAGAGAGAGGAATTAGCCGAACTGAAGAAGAAGCACCAAGTAGCTGTCTCTGATTTTTTGAATGAGTTTTCTCCAGAAATTTCCCTACAGCTTCTAAATATATGCAACCTGCAGTTGCCTGACAGTGAAGTGTAG 1764 0.4116 MTLDSSELDGDPDTEFAEIDPAGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVSDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKTENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQASSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECTNAAQIYKKVISGIKPASLAKVNDPEVKAFIEKCIANVSQRLPAKVLLMDPFLQSDFDGDSVGRSSSSRTQHSGNNFDNLPIAKSAKDNSVEANREFTVEGQRRDVNTIFLKLRIADSSGHIRNIHFPFDIGADTSVSVASEMVEELELSDQDVSTIAMTIDSEIRYHIPSWNPSETPDNSSYHDSGHTPETMPEASPITNDSPGSLALEILPSGRKYWSDSPKGVGGSSPYLHGSSNLSHEVDVIAEEDILFANSAEKECDGTADSPFSERSITSDHFEAAGEEEIYVSLEDSETEDIDKIASKLETLLGMQREELAELKKKHQVAVSDFLNEFSPEISLQLLNICNLQLPDSEV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01963 587 MobiDBLite consensus disorder prediction 401 438 - -
Vifa2g01963 587 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 396 IPR024678 GO:0004674|GO:0005524
Vifa2g01963 587 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Vifa2g01963 587 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01963 587 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 509 - -
Vifa2g01963 587 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Vifa2g01963 587 Gene3D - 338 425 - -
Vifa2g01963 587 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Vifa2g01963 587 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vifa2g01963 587 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01963 587 MobiDBLite consensus disorder prediction 404 435 - -
Vifa2g01963 587 CDD STKc_WNK 24 284 - -
Vifa2g01963 587 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01963 587 Coils Coil 534 554 - -
Vifa2g01963 587 SUPERFAMILY Protein kinase-like (PK-like) 28 285 IPR011009 -
Vifa2g01963 587 FunFam Probable serine/threonine-protein kinase WNK3 338 429 - -
Vifa2g01963 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01963 Vifa-Chr2 506215779 506219306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01963 102 586 MAP Kinase Kinase Kinase AT3G48260 55.236 1.24e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g01963 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01963 K08867 - gmx:100301899 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01963 2 506215779 506219306 Vifa2g01963 2 506215779 506219306 ECH