Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01955 ATGGAGATGGAGCGCATGGTTGAATTCTCACGCACTTACATGGATCGTCCCCCACGAAAAAGGGCGCGCTTGGGCTGGGACATTCCCGAACCCTCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATATCACTAGTTCTCTATTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGACGACAAAGATGGACATTACGTGTTTGAGCTTGGAGATAATTTAACTTCTCGCTATAAGGTCCATGGAAAAATGGGTGAAGGAACATTTGGTCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATTAAAGTTGTTCGGGCAATAAAAAAGTATCGAGAGGCGGCCATGATTGAAATCGAGATGCTGCAGCAACTCGCAAAACATGATAAAGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCGTTTCCCATTGATCTTGTTCGCGAGATTGGAAGGCAACTATTGGAATGTGTTGCATTCATGCATGACTTACACATGATCCATACTGATCTGAAGCCTGAAAACATTCTTCTGGTTTCATCGGAGTATCTTAAAGTCCCTGATTACAAGAGTTCATCCAGAGCACCATTCTCCTTTTTCAAAAGAGTGCCCAAGTCAAGCGCCATTAAGGTTATTGATTTTGGCAGCACTACTTATGAACGAGAAAACCAGAATTACATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATGTGTGGAGTGTGGGTTGTATATTAGTCGAGTTATGCACTGGTGAAGCTTTGTTTCAGACTCACGAAAATTTAGAGCATCTTGCCATGATGGAGAGGGTGCTTGGTCCATTACCACAGCAGTTACTGAAGAGAGTTGACCGACATGCTGAGAAGTATGTTCGAAGAGGGAGACTGGACTGGCCAGAAGGTGCAACTTCGAGGGAGAGTATTAAAGCTGTAATGAAACTTCCTCGACTGCAGAACCTTATAATGCAGCATGTTGATCATTCGGCTGGAGATCTTATACATCTATTGCAGGGGCTACTTAGGTTTGACCCCTTTGAAAGAGTTACAGCTAGGGATGCTCTGAGACATTCATTCTTTATGAGAGATCACCTTAGGAGATGA 1278 0.4358 MEMERMVEFSRTYMDRPPRKRARLGWDIPEPSKAQVGLFCGQEVENISSYAPSEHITSSLFKGVARNGSPPWRDDDKDGHYVFELGDNLTSRYKVHGKMGEGTFGQVLECWDRERKEMVAIKVVRAIKKYREAAMIEIEMLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLHMIHTDLKPENILLVSSEYLKVPDYKSSSRAPFSFFKRVPKSSAIKVIDFGSTTYERENQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQQLLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPFERVTARDALRHSFFMRDHLRR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01955 425 SUPERFAMILY Protein kinase-like (PK-like) 80 421 IPR011009 -
Vifa2g01955 425 SMART serkin_6 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01955 425 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Vifa2g01955 425 Pfam Protein kinase domain 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01955 425 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 421 - -
Vifa2g01955 425 Gene3D Transferase(Phosphotransferase) domain 1 147 418 - -
Vifa2g01955 425 FunFam Serine/threonine-protein kinase AFC2 169 418 - -
Vifa2g01955 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vifa2g01955 425 ProSiteProfiles Protein kinase domain profile. 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01955 425 CDD PKc_CLK 80 418 - -
Vifa2g01955 425 FunFam Serine/threonine-protein kinase AFC2 80 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01955 Vifa-Chr2 504703125 504706194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01955 98 418 Core Cell Cycle Gene Families AT1G76540 25.000 8.53e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vifa2g01955 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01955 K08287 - gmx:100808961 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01955 2 504703125 504706194 Vifa2g01955 2 504703125 504706194 ECH