Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01949 ATGTCTGTTACTTCCACCACTCCTCTCTTCAAAACCCTAACCATAGCCTCACTCTTCCTCACCAAAACCAAAACCACCTCCTTATCACTCCCATCCCAACCCTTCAAACTCCATCTCTCCCTCAATTCTTCACCCTCTCTCACTCTCTCACTAAAAACCAATCGCGCTTCACCTCTCTTCGCCGCGCAAGAAGGTGGCACACTAACCACAGACGAACAAGGTGTCGATGAAACCGAAGGACTTCTCGATTGGGAGGAAACCGACGCTGCTGAAAACGAGGCTGTTGAAGAAAACTCTGCGGAGGGAGATTTTGCTGAACCATCCGAAGATGCCAAATTGTTCGTTGGTAATTTGCCTTATGATGTTGATGGTGAGAAACTCGCCATGCTTTTTGAACAAGCTGGAACTGTAGAGATTGCAGAGGTTGTTTATAACAGGGAAACTGACCAGAGTCGTGGCTTTGGATTTGTAACCATGAGTACGGTTGAAGAAGCTGAAGCTGGCGCGGAGAAATTCAACCGCTATGATTATAATGGAAGATCCTTGACTGTGAATAAGGCTGCTCCAAGAGGTTCAAGGCCAGAGCGGGAAGAGCGCCCACCCCGTACCTATGTTCCTGTCATAAGAGTTTATGTTGGTAACTTATCGTGGCAAGTTGATGGTAGTAGACTTGAGCAAGTTTTCAGTGAATATGGTAAGGTTGTGAATGCTCGAGTAATCTATGATAGAGAGACGGGTCAGTCACGTGGCTTTGGCTTTGTCACGATGTCTGATGAGAAAGAAATGAATGATGCTATCGCTGCCCTTAATGGTCAGAGTTTGGAAGGGAGGACATTAAAAGTGAGTGTTGCTGAGGACAACAGGCCCAGTCGTGGCCCCTTTTGA 885 0.4689 MSVTSTTPLFKTLTIASLFLTKTKTTSLSLPSQPFKLHLSLNSSPSLTLSLKTNRASPLFAAQEGGTLTTDEQGVDETEGLLDWEETDAAENEAVEENSAEGDFAEPSEDAKLFVGNLPYDVDGEKLAMLFEQAGTVEIAEVVYNRETDQSRGFGFVTMSTVEEAEAGAEKFNRYDYNGRSLTVNKAAPRGSRPEREERPPRTYVPVIRVYVGNLSWQVDGSRLEQVFSEYGKVVNARVIYDRETGQSRGFGFVTMSDEKEMNDAIAALNGQSLEGRTLKVSVAEDNRPSRGPF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01949 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Vifa2g01949 294 PANTHER OS02G0815200 PROTEIN 23 289 - -
Vifa2g01949 294 SUPERFAMILY RNA-binding domain, RBD 201 291 IPR035979 GO:0003676
Vifa2g01949 294 PRINTS Paraneoplastic encephalomyelitis antigen family signature 111 126 IPR002343 GO:0003723|GO:1990904
Vifa2g01949 294 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723|GO:1990904
Vifa2g01949 294 PRINTS Paraneoplastic encephalomyelitis antigen family signature 269 286 IPR002343 GO:0003723|GO:1990904
Vifa2g01949 294 PRINTS Paraneoplastic encephalomyelitis antigen family signature 228 240 IPR002343 GO:0003723|GO:1990904
Vifa2g01949 294 CDD RRM2_NsCP33_like 209 284 - -
Vifa2g01949 294 SUPERFAMILY RNA-binding domain, RBD 107 199 IPR035979 GO:0003676
Vifa2g01949 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Vifa2g01949 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Vifa2g01949 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vifa2g01949 294 SMART rrm1_1 209 282 IPR000504 GO:0003723
Vifa2g01949 294 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vifa2g01949 294 Gene3D - 197 293 IPR012677 -
Vifa2g01949 294 FunFam 31 kDa ribonucleoprotein, chloroplastic 198 292 - -
Vifa2g01949 294 Gene3D - 64 196 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01949 Vifa-Chr2 503697452 503698850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01949 97 290 Eukaryotic Initiation Factors Gene Family AT3G16380 27.041 2.31e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01949 - - tpra:123897635 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01949 2 503697452 503698850 Vifa2g01949 2 503697452 503698850 ECH
Vifa2g01949 2 503697452 503698850 Vifa2g01949 2 503697452 503698850 PCT