LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g01945	ATGGCTAAAACCAGCACTATCCACCAAATCCTCGTACTCTTCTCATTCCTCTCTCTTCTTTTCCCCGTTCATTCCAAACTTCACCTCCACCCTTCCGACGCAAAAGCCCTCACATCTCTCCAAAACAACCTCGGCCTCAAAACCAACACCACCAACCACCCCTGTAACACGGCGGGCGTGTTCTGTGAAAGACGACTCACCACCAACGAAAGCTACTCCCTCCGAGTCACAAAACTCGTTTTCAAATCAAAGAAACTCAGTGGCACACTTTCACCAACCATAGGAAAACTCACAGATCTCAAAGAACTCTCTCTTCCAAACAATAATCTCGTTGACCGTATCCCTTCCTCCATAGTTGACTGCAGAAAACTCGAGATTCTTAATGTTGCTGATAATTTTTTCTCCGGTGAAGTTCCTTCTGAATTCTCTTCGCTTGTCCGTCTTCGTTTTCTCGATATCTCGGGCAATAAACTCTCCGGAAACTTGAATTTTCTTCGGTATTTTCCGAATTTAGAAACTCTTTCTGTTGCGAATAATCACTTTACAGGAAGAGTTCCTGCTTCGGTTAGGTCTTTTCGTAATCTCAGACAGTTTAACTTCTCTGGTAACCGTTTTCTTGAAAGCCTGCCGTTGAATCAGAAGCTTCTAGAATATGATAATACTAACACCAATACTAATACCGCGGCAAAACGCTATATCCTTGCTGAGAATGATAATTCGAAATCAAATGGAACAAGGACTCGTTCTGGTGGTTCTCATTCGCCTGCTCCAGCACCTGGTCCTGCAGCAGTGGATCCTCACCACAAGCATAAGAAGAACAGAAGGAAGCTTACTGGATGGGCTCTTGGATTTGTGGCCGGAGCATTCGCTGGGATACTCTCCGGTTTCGTGTTTTCGTTGTTGTTTAAGTTGGCTTTGATTATGATTAAAGGAAAAGGAAAGGGTTCTGGTCCCGCAATTTATAGTTCTGTGATTAAGAAAGCTGAGGATCTGGCTTTCTTGGAGAAAGAAGACAGTTTAGCCTCGTTGGAGCTTATCGGGAGAGGTGGATGTGGAGAGGTTTACAAGGCGGAGTTACCGGGGAGTAATGGTAAAATGATTGCTATAAAGAAGATTATTCAGCCGTCGAAGGATGCAGCGGAGTTGGCTGAAGAAGATAGTAAGCTTCTGCATAAGAAGATGCGACAAATTAAGTCGGAGATTGATACTGTCGGCCAGATTCGTCATCGCAATCTTTTGCCTCTTTTGGCTCATGTTTCTAGACCGGATTGTCATTACCTTGTTTATGAGTTTATGAAGAATGGAAGTTTGCAGGATATGTTGAACAAAGTTGAAAGAGGTGAAGCGGAGTTGGATTGGTTGACAAGGCATAGGATTGCACTTGGTATCGCGGAAGGGCTTGAATACCTTCATACGAGCCAAAGTCCTCGCATAATTCATCGAGATCTCAAGCCTGCAAACATTCTTCTTGATGATGATATGGAAGCTAGGATTGCGGATTTTGGACTCGCAAAAACAATGCCTGATGCACAGACGCATATCACTGCTTCGAACGTGGCTGGCACGGTGGGATATATTGCGCCCGAGTATCACCAGATATTCAAATTCAGTGACAAGTGTGACATATATAGTTTCGGTGTTATGCTTGGTGTTTTGGTGATAGGAAAGCTTCCTTCTGATGATTTTTTTCAAAATACTGATGAGATGAGTTTGGTCAAGTGGATGAGAAATGTGATAACTTCAGAAAATCCGAAGGAGGCAATTGATGCAAAGCTCATAGGTAATGGTTATGAGGAACAGATGCTTCTGGTTTTGAAGATTGCTTGTTTTTGTACCATGGATAATCCTAAAGAGAGACCTGATAGTAAGAATGTCAGGGTCATGTTGTTCCAAATCAAGCATTAG	1905	0.4315	MAKTSTIHQILVLFSFLSLLFPVHSKLHLHPSDAKALTSLQNNLGLKTNTTNHPCNTAGVFCERRLTTNESYSLRVTKLVFKSKKLSGTLSPTIGKLTDLKELSLPNNNLVDRIPSSIVDCRKLEILNVADNFFSGEVPSEFSSLVRLRFLDISGNKLSGNLNFLRYFPNLETLSVANNHFTGRVPASVRSFRNLRQFNFSGNRFLESLPLNQKLLEYDNTNTNTNTAAKRYILAENDNSKSNGTRTRSGGSHSPAPAPGPAAVDPHHKHKKNRRKLTGWALGFVAGAFAGILSGFVFSLLFKLALIMIKGKGKGSGPAIYSSVIKKAEDLAFLEKEDSLASLELIGRGGCGEVYKAELPGSNGKMIAIKKIIQPSKDAAELAEEDSKLLHKKMRQIKSEIDTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDMLNKVERGEAELDWLTRHRIALGIAEGLEYLHTSQSPRIIHRDLKPANILLDDDMEARIADFGLAKTMPDAQTHITASNVAGTVGYIAPEYHQIFKFSDKCDIYSFGVMLGVLVIGKLPSDDFFQNTDEMSLVKWMRNVITSENPKEAIDAKLIGNGYEEQMLLVLKIACFCTMDNPKERPDSKNVRVMLFQIKH	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g01945	634	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	56	632	-	-
	Vifa2g01945	634	FunFam	Leucine-rich repeat receptor-like protein kinase	432	634	-	-
	Vifa2g01945	634	MobiDBLite	consensus disorder prediction	232	271	-	-
	Vifa2g01945	634	FunFam	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1	327	431	-	-
	Vifa2g01945	634	Pfam	Leucine rich repeat	100	158	IPR001611	GO:0005515
	Vifa2g01945	634	Gene3D	Ribonuclease Inhibitor	32	142	IPR032675	-
	Vifa2g01945	634	Gene3D	Ribonuclease Inhibitor	143	242	IPR032675	-
	Vifa2g01945	634	Coils	Coil	380	400	-	-
	Vifa2g01945	634	SMART	serkin_6	340	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01945	634	MobiDBLite	consensus disorder prediction	232	252	-	-
	Vifa2g01945	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Vifa2g01945	634	Gene3D	Transferase(Phosphotransferase) domain 1	432	633	-	-
	Vifa2g01945	634	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	71	162	-	-
	Vifa2g01945	634	Gene3D	Phosphorylase Kinase; domain 1	327	431	-	-
	Vifa2g01945	634	Pfam	Protein kinase domain	343	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01945	634	ProSiteProfiles	Protein kinase domain profile.	340	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01945	634	SUPERFAMILY	Protein kinase-like (PK-like)	335	632	IPR011009	-
	Vifa2g01945	634	SUPERFAMILY	L domain-like	55	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g01945	Vifa-Chr2	502498048	502499952	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g01945	10	634	Receptor kinase-like Gene Family	AT2G31880	61.453	0.0	773

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Vifa2g01945		Pkinase	1.1e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g01945	-		-	gmx:100811980	867.84