Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01940 ATGACAAACACACCTTTCTCTTTCGGTTTTTTGTTCTTCTCTCTTTTCATACCTACCCTTGTTTCCTCGTCACCTCTCCAAAACCCCGAATTGGTTGTCCAAGAAGTAAACAGGAAAATTAATGCCTCTGCAACTAGGAGAAATTTAGGGTACCTATCTTGTGGAAGTGGAAACCCTATTGATGATTGTTGGAGATGTGATTCCAATTGGGAGAAAAACAGACAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAAAACGCCATGGGTGGAAAAAACGGTAAGACCTACGTTGTAACCGACTCGGGCGACGACAATCCGGTGAGTCCAACGCCGGGAACACTCCGTCACGCAGTGATCCAAGAGGAACCATTATGGATAATCTTCGCGAGAGACATGGTGATAAAATTAAAAGAAGAATTAATCATGAACTCTTTCAAAACAATTGATGGGAGAGGTGCTAGTGTCCACATTGCTGGTGGTCCATGCATTACTATACAATTTGTGACTAATATTATCATACATGGAATAAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCATTTCGGGTGGAGGACGATATCGGACGGCGACGGTGTGTCGATTTTTGGTGGAAGTCATGTTTGGATTGATCATTGTTCTTTGTCTAATTGTGAAGATGGTTTGATTGATGCTATTTATGGATCCACTGATATAACAATTTCTAACAATTATATGACACACCATGATAAGGTCATGTTGTTGGGTCATAGTGATTCCTATGTTAAAGATAAAAATATGCAAGTTACGATTGCTTTTAACCACTTTGGCGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGACTAGGATATTTCCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCAAATCCCACCATAAACAGCCAAGGCAACAGATTTGTTGCACCCGATGCTCGATTCAGCAAAGAGGTAACAAAGTACGAAGATGCAGAAGAGAGTGAATGGAAGAATTGGAACTGGAGATCAGAAGGAGACTTAATGTTAAATGGTGCATTTTTCACTCCTTCTGGTGGTGGAACTTCATCTAGCTATGCAAGAGCTTCTAGTTTAAGTGCAAGACCATCTTCTCTTGTGGGTTCCATTACTATTGCTTCTGGAACACTTAACTGTAAGAAAGGTTCACCTTGTTAG 1221 0.412 MTNTPFSFGFLFFSLFIPTLVSSSPLQNPELVVQEVNRKINASATRRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAMGGKNGKTYVVTDSGDDNPVSPTPGTLRHAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWIDHCSLSNCEDGLIDAIYGSTDITISNNYMTHHDKVMLLGHSDSYVKDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDARFSKEVTKYEDAEESEWKNWNWRSEGDLMLNGAFFTPSGGGTSSSYARASSLSARPSSLVGSITIASGTLNCKKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01940 406 SMART amb_all 132 329 IPR002022 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Vifa2g01940 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Vifa2g01940 406 FunFam Pectate lyase 57 399 - -
Vifa2g01940 406 Pfam Pectate lyase 140 323 IPR002022 -
Vifa2g01940 406 Gene3D - 57 399 IPR012334 -
Vifa2g01940 406 SUPERFAMILY Pectin lyase-like 37 377 IPR011050 -
Vifa2g01940 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01940 Vifa-Chr2 501740742 501743651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01940 1 406 Polysaccharide Lyase AT5G63180 77.506 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01940 K01728 - gmx:100101868 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01940 2 501740742 501743651 Vifa2g01940 2 501740742 501743651 ECH
Vifa2g02507 2 660335956 660337622 Vifa2g01940 2 501740742 501743651 ECH
Vifa2g01940 2 501740742 501743651 Vifa2g01940 2 501740742 501743651 PCT