Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01939 ATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTGCTATGTACAAAGTGGTACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATGAATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAGCTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGCTCTGGTGAGAAAAACAACAGGGGAAGGGATTGGTGCAAGTAAACTAGTAACCATGTCAGACATCGAATTGGAGCAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGATACCTCTAACGCGTTTGGCCAAGTTGAACAAGCCTGAAGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTGTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAGGAAAGAGTCAAGGCTATGGTCACTTCTATATGTAGGTTTGGGTTTCGTTACTCTAGTGGTTTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAATTCGTTCGTTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTTACAATCCTGCAAATTCAAGTGGTGCAGTAGGTGCAAGGCTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCTTTGGCACCAGACGCTAACAAGGCGAAAGATTCCACAGCTTCAATATTTAAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAATGCAAGAAACGGTAGTTGGTAAACCTGAGCTGTCAAAAGTTGTGCAATATTCCTCAGAGATAAGAAAGCTAAAGTTAGAACTAAAGCAAGAACGTGATCAGTTGGCTGATATTCAACTAAATTTTCGTGATGATATTTTTCTGAAACTGAGAAGGAACTTGACCCTTTTCTGTTACATTCTAAACCCTTTTATTGCATCATTGAGAAATTGGAATCTCTGCAAGGGATTGTACACTTTTGCAATGTCATGTTCTGGATTACATAGTCTTGGTTATCTAACCATGTTTGATATTATTGCTTGGAAGACATCAAAGGAGCTGAGAAAAGTACAATATGAATTGAATGTGAAAGCATCTGAAATAAAGCATCCGAAATAA 1965 0.402 MGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVVLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEMNARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLALVRKTTGEGIGASKLVTMSDIELEQGQLDNKEKPKRIPLTRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQRKESRLWSLLYVGLGFVTLVVLPLQNYFFGIAGGKLIERIRSLTFEKIVHQEIRWFYNPANSSGAVGARLSTDASTVKSLVGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKAKDSTASIFKILDSKPDIDSSSKEGVMQETVVGKPELSKVVQYSSEIRKLKLELKQERDQLADIQLNFRDDIFLKLRRNLTLFCYILNPFIASLRNWNLCKGLYTFAMSCSGLHSLGYLTMFDIIAWKTSKELRKVQYELNVKASEIKHPK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01939 654 Coils Coil 543 570 - -
Vifa2g01939 654 Pfam Sel1 repeat 145 177 IPR006597 -
Vifa2g01939 654 Pfam Sel1 repeat 107 142 IPR006597 -
Vifa2g01939 654 Pfam Sel1 repeat 181 215 IPR006597 -
Vifa2g01939 654 Pfam Sel1 repeat 220 251 IPR006597 -
Vifa2g01939 654 SUPERFAMILY ABC transporter transmembrane region 309 520 IPR036640 GO:0005524|GO:0016020
Vifa2g01939 654 Gene3D Tetratricopeptide repeat domain 71 182 IPR011990 GO:0005515
Vifa2g01939 654 SUPERFAMILY HCP-like 88 197 - -
Vifa2g01939 654 Gene3D Tetratricopeptide repeat domain 183 278 IPR011990 GO:0005515
Vifa2g01939 654 SUPERFAMILY HCP-like 199 277 - -
Vifa2g01939 654 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 1 277 IPR044623 GO:0030433
Vifa2g01939 654 CDD ABC_6TM_Pgp_ABCB1_D2_like 319 521 - -
Vifa2g01939 654 SMART sel1 144 179 IPR006597 -
Vifa2g01939 654 SMART sel1 180 216 IPR006597 -
Vifa2g01939 654 SMART sel1 217 252 IPR006597 -
Vifa2g01939 654 SMART sel1 107 143 IPR006597 -
Vifa2g01939 654 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 72 183 - -
Vifa2g01939 654 Pfam ABC transporter transmembrane region 330 449 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01939 654 Gene3D ABC transporter type 1, transmembrane domain 287 526 IPR036640 GO:0005524|GO:0016020
Vifa2g01939 654 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 474 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01939 Vifa-Chr2 501639887 501643427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01939 446 585 Calmodulin-binding Proteins AT2G36910 29.787 2.24e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01939 K14026 - psat:127101456 543.502