Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01938 ATGGATGAGCGGCGGCATTCTGTTGATATACCGATATCGAAGACTCTTGTGGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGATCAAACATTCTTCTTTCATTGACAACTTACATTGGGATAACCGTTCGGGCAATGGGATTTCTCTGCTGTTTCCGGAGGATGTTCCTGCTTGTGATTCTGATGATAGCCTTTCTTTTAGAACAAGGAATTTAGGTTTTAAGGGGCAAAGAGATTTGGGTGCTACTGGTTTTGAATTGCATCATGGTCTGTTGAATTCACGGCTGAATAGATCAAGTGTTTATGGAAATAAATCGCCTAATGAAAGCTGTGGTAGTAACAATGGTGGTAAAGGATCGAGTATGAATGATTTCGGGGATGGGGAATTATGCCTTAGAACAACTGGCAGATCATCTAAGTTAGGGAGAATAGATCGCATTAAGTTGGTCAAAAAGCCCTTGCGCAGGAATCAAGTTAAACCATCTGATGGGATGGGAGATATTGCTATTGCTACCCATTTGAGCAGTCCATGCCTTTCCGATCGTGATGCTTTATTGACGCATGGTTCCTCGGCGTATATGAATCAAGATTTTGATGTTCAAGATAATAGTGATAATGGATGTGGATTAAGTTATTGTTGGTCAAAGTCACCAAGGTTTATAGAGTCAGATAATTATTGTGAGGCAGAAGATCTTCCATTGGTATTGCACTGTGTGGAGGACATGGAACTTCAAGAACGTAGAAGTGCCAGACACAGTGGTGGCGAAGTTAGTCCAAATTTGGAAACACCTAGAATGTTATCTATGAAATTTAGGCCTAAATTGTTTGATGATTTGGTGGGACAAGATGTGGTTGTTAGGTCTCTTTTGGGTGCGATCTCTAGTGGAAGGATAACATCATTTTATCTTTTCCATGGTCCACGCGGTACTGGTAAGACATCTGCCTCGAGAATATTTGCTTCTGCGCTTAATTGCCTTTCTGTTGGGGAGCAAAGACCGTGTGGTTTGTGTAGAGAATGTGTTCTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGTAGTGGATTCTGTGAAAATCAATCAAACGGATCAGGTTAAATCACTTGTTAAGAATGCGTGTTCTCCTCCAGTTTACTCGCGTTATAAAATTTTCATTATCGATGAATGCCAGTTATTGAACGAAGAAACATGGGCTTGCCTTTCGAATAACCTAGGGAACATTTCTCAACGTGTGGTTTTTGTTATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCTCAGAGGTATTACTTTCCAAAGGTTAAAGACTCTGATATTGCACGCCGATTAGAAAAAATTTGTGCTGAAGAAGGTCTTGAATATGAACAAGCTGCTTTGGACCTTATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAGATTAATGTTTCTTTAGTTTATGAGCTTACCGGGATTGTTTCGGATGATGAATTGTTTGATTTGCTAGATTTGGCCCTATCACCTGACACCACAAATACAGTTATAAGAGCTCGAGAGCTGATGAGATCGAGGATAGATCCTATGCAACTTGTGTCACAGTTGGCAAATATCATAATGGACGTCCTTGCTGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTCTAGTAGATACACATCGGAAGAAGACCTTCAGAAACTAAGCCATGCGTTGAGAATACTCTCCGAGGCCGAGAAACAATTAAAAATTTCCAAAAATCAAACAACATGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGATTACCCTTCCACAGATGCAGATGGTACCGAGTTGCTTCCGAGAGGGAAGAGCATGGAACACCTTGCTACAGGTGGTTGCGAAAACAAGTCATTTAGATTAGCGGCGCACGAGGATCATGAAGGAACACTGGATTCCATATGGTATAAAGCTACCGGGATATGTCAATCTAGTCAGCTCAAAACCTTTCTCAGAAAGAAGGGAAAGTTGTCTTCACTTCATGTTGATCAATCTACTTGTCTTGCTATTGCAGAGTTGGAGTTTGGCCATCCCCGCTATGTATCCAAGGCTGAGAAGTCATGGAAATTGATAGCAAGTTCCTTGCAACGCATATTGGGTTGTAACATAGAGTTGAGGATCACTCATGTACCTCATACTTCTAACTCTCCGAAGAGGTTATCTTTCAACATGTTTAGTTGTTCGCGCAAAATACAACAGAAATCATCCTCGTCCAATGAACAAGAAAGTGAAATAGACTCTGCTGATTACACTTCTCAAAAACACATGACGAATCATACAACTCTATCTGCTTCCTCTGATTGTGGATCCCAGGAGCCGCCACTGAAGTCTTCTTACGAAGGAATGGATGTCATAACGACTCTGAGGAGTTGTGAAGGGAACTTGCTCAGCTCAAGAGAAAGATTTTTGAATCGGTCTTCTTCTCTAGAGACTATGGGAGCATCAAGTTCTAGAGTTGATTCTTTCAGTGAAGAGGGTCACAATGGTGCACATTTAGTTCCATCAGTTCCCAATTCAGATAATCAGTCTAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGTTCCGAGCTTCACATTCATCCAAGTAG 2682 0.4098 MDERRHSVDIPISKTLVALRRVRSLRDPSTNSMIKHSSFIDNLHWDNRSGNGISLLFPEDVPACDSDDSLSFRTRNLGFKGQRDLGATGFELHHGLLNSRLNRSSVYGNKSPNESCGSNNGGKGSSMNDFGDGELCLRTTGRSSKLGRIDRIKLVKKPLRRNQVKPSDGMGDIAIATHLSSPCLSDRDALLTHGSSAYMNQDFDVQDNSDNGCGLSYCWSKSPRFIESDNYCEAEDLPLVLHCVEDMELQERRSARHSGGEVSPNLETPRMLSMKFRPKLFDDLVGQDVVVRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFASALNCLSVGEQRPCGLCRECVLFFSGRSKDVKVVDSVKINQTDQVKSLVKNACSPPVYSRYKIFIIDECQLLNEETWACLSNNLGNISQRVVFVMITPDLDKLPQSAVSRAQRYYFPKVKDSDIARRLEKICAEEGLEYEQAALDLIAAKSCGSVRDAEIMLDQLSLLGKKINVSLVYELTGIVSDDELFDLLDLALSPDTTNTVIRARELMRSRIDPMQLVSQLANIIMDVLAGKCDYEARSRFSSRYTSEEDLQKLSHALRILSEAEKQLKISKNQTTWFTVALLQLSSIDYPSTDADGTELLPRGKSMEHLATGGCENKSFRLAAHEDHEGTLDSIWYKATGICQSSQLKTFLRKKGKLSSLHVDQSTCLAIAELEFGHPRYVSKAEKSWKLIASSLQRILGCNIELRITHVPHTSNSPKRLSFNMFSCSRKIQQKSSSSNEQESEIDSADYTSQKHMTNHTTLSASSDCGSQEPPLKSSYEGMDVITTLRSCEGNLLSSRERFLNRSSSLETMGASSSRVDSFSEEGHNGAHLVPSVPNSDNQSNCFPQTLWLQKKFRASHSSK 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01938 893 Pfam DNA polymerase III, delta subunit 287 444 - -
Vifa2g01938 893 FunFam DNA polymerase III subunit gamma/tau 445 507 - -
Vifa2g01938 893 MobiDBLite consensus disorder prediction 849 870 - -
Vifa2g01938 893 CDD HLD_clamp_pol_III_gamma_tau 444 507 IPR045085 -
Vifa2g01938 893 SUPERFAMILY post-AAA+ oligomerization domain-like 508 615 IPR008921 GO:0003677|GO:0006260
Vifa2g01938 893 Gene3D - 264 442 IPR027417 -
Vifa2g01938 893 NCBIfam DNA polymerase III subunit gamma/tau 271 614 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vifa2g01938 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 493 IPR027417 -
Vifa2g01938 893 Gene3D - 445 507 - -
Vifa2g01938 893 MobiDBLite consensus disorder prediction 763 803 - -
Vifa2g01938 893 MobiDBLite consensus disorder prediction 763 806 - -
Vifa2g01938 893 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 273 686 - -
Vifa2g01938 893 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01938 Vifa-Chr2 501510887 501514225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01938 262 556 Core DNA Replication Machinery Family AT1G21690 23.746 8.64e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01938 - - tpra:123897029 1378.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01938 2 501510887 501514225 Vifa2g01938 2 501510887 501514225 ECH
Vifa2g01938 2 501510887 501514225 Vifa2g01938 2 501510887 501514225 PCT