Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01934 ATGATGGATGCTCTGTTTTCTCCCATCACCTCCTCCACCAAACCCGATTTTTATATCAACGGTCCCAGAGGAACCCGCGTTCCAGCTCACGCAGCAATTTTGGCTTCAGCGTCCCCTGTTCTAGAGAACATGATAAAGTCCAACCGAATCATCGAAATTCGCGGCGTTCCATACGACGCCGTTGTAGCCTTCGTACGTTTCTTCTACACCTTCAGTTGCAGCGATGAGGATATGCAAAATTACGGAATACACCTTCTTGCATTGTCGCACGCATATTCAGTACCAAAGCTGAAACAGAGTTGTGTTACTGGTTTATCCAAACTCGCGAACATAGAGAATGTAGTGGACGTGCTGCATTTAGCAAGGCTCTGCGATGCACCGGATCTTTACCTCAACTGTGCGATGTTAATTAGAAATAATTTCAGAGCAGTGCGAAAAACAGAGGGATGGAAATTCTTGCACACACATGATCCTTTGCTCCAACTCGATATTGTCCAATTAATCAACGAACACAAATCGAGGAAGAAGAGAATGAAGAGACAGAGGAAGGAACAGGAGGTGTTTATGCAACTGAGCGAAGCAATGGAATGTTTGGAACATATATGTACGGAAGGATGTACCAGCGTGGCGCCGTACGATGTGGATGTGAAAGAGAAGAGGAAGAGGATGCCTTGTTCGAAATTCTCCACGTGTCAAGGTTTGCAGGGGCTGATTCGACAATTTGCAACGTGTGAGAAGAGAATGAAGGGAGGGTGTGTGAGGTGTAAGAGATTGTGGCAACTATTTAGACTTCACTCATGCATTTGCCTTCATCAAGATTCATGCAAGGTCCCTCTATGCAGGCAATTTCAATTGAAAATGGAGAAAGAGAACAAGGAAGATGATCCGAGCTGGAAACTACTAGTGAGGAAAGTGGGCTCAGCTAAAGCTATGTCTTCCTTACAGCTGCTAAAGACAAAGCGATATTAG 969 0.4499 MMDALFSPITSSTKPDFYINGPRGTRVPAHAAILASASPVLENMIKSNRIIEIRGVPYDAVVAFVRFFYTFSCSDEDMQNYGIHLLALSHAYSVPKLKQSCVTGLSKLANIENVVDVLHLARLCDAPDLYLNCAMLIRNNFRAVRKTEGWKFLHTHDPLLQLDIVQLINEHKSRKKRMKRQRKEQEVFMQLSEAMECLEHICTEGCTSVAPYDVDVKEKRKRMPCSKFSTCQGLQGLIRQFATCEKRMKGGCVRCKRLWQLFRLHSCICLHQDSCKVPLCRQFQLKMEKENKEDDPSWKLLVRKVGSAKAMSSLQLLKTKRY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01934 322 SMART BTB_4 15 109 IPR000210 GO:0005515
Vifa2g01934 322 Pfam BTB/POZ domain 24 105 IPR000210 GO:0005515
Vifa2g01934 322 Gene3D Potassium Channel Kv1.1; Chain A 5 105 IPR011333 -
Vifa2g01934 322 SMART TAZ_2 185 281 IPR000197 -
Vifa2g01934 322 SUPERFAMILY TAZ domain 183 284 IPR035898 -
Vifa2g01934 322 Coils Coil 319 322 - -
Vifa2g01934 322 FunFam BTB/POZ and TAZ domain-containing protein 2 110 180 - -
Vifa2g01934 322 ProSiteProfiles BTB domain profile. 15 70 IPR000210 GO:0005515
Vifa2g01934 322 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 12 319 IPR044513 -
Vifa2g01934 322 FunFam BTB/POZ and TAZ domain-containing protein 2 181 309 - -
Vifa2g01934 322 Gene3D TAZ domain 182 307 IPR035898 -
Vifa2g01934 322 SUPERFAMILY POZ domain 23 137 IPR011333 -
Vifa2g01934 322 Gene3D - 108 181 - -
Vifa2g01934 322 CDD BACK 110 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01934 Vifa-Chr2 501369420 501375315 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa2g01934 BTB 3.2e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01934 - - gmx:100813611 422.165