Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01926 ATGGTAGTTTCTGACTTAAACGGCGACGTATTCCCATGGCTGAAATCCATGCCAGTAGCACCCGAATACCGACCAACCGCCGCGGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAGAAGGAAGCATCACAATACGGAATCTGCAAAATCGTTCCACCGTTTCCGCCGTCACCGAAGAAAACCGCCATAGCTAACCTCAACAGGTCACTGGTTAATTCCACATTCACCACACGTCAGCAGCAGATCGGGTTCTGTCCGCGGAAGTCCCGCCCCGTGAAACGACCCGTCTGGCAGAGTGGGGACCACTACACTTTCGCTGAGTTCGAAGCCAAAGCCAAATGGTTTGAGAAAAGTTACTTGAAGAAGCTTAACAAGAAGGCTGGTGGTAATGGTGGTGTTTCTGCTCTTGAAACAGAGACCATGTTTTGGAAGGCTACGGTTGATAAACCGTTTTCGGTTGAGTATGCCAACGACATGCCCGGTTCTGCATTTTCGGCGCAATGTCGATATGCTGGTGAGGCTGCTTCGGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCCAGGGCCAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACTTCGCCTATGGTTTATCTTGCTATGCTTTTCAGCTGGTTTGCTTGGCATGTGGAGGATCATGATCTTCATAGCTTGAATTATCTACATATGGGTGCTTCTAAGACATGGTATGGTGTTCCTAGGGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTGGGTGAGAAAACCACAGTGATGTCACCTGAAGTGCTTGTTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACTGGATTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATAGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGAATCAGTGCGGAACCACGGAGTTCTCGTCTTAAAGATAAAAAGAAGGGTGAAGGAGACTCTGTAGTCAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTGCTTCATGTACTCGGAAAAGAATCTCCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGTGTTGGATGCCAGCAACAAAAAGTGAACCCTGAATTTTCCATTAATGTATGCAACTCCAAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTAGGGAAGGGGATTTCCTCGTTTGATGCAAACGGTAACACCCCCCCTTCAAGTTCTAAGCAACTTCAAACAGGAAACAACAGTGAAACTAATCAAGGAAACGGGTTGTCAGATCAGAGACTGTTTTCGTGCGTCACATGTGGACTATTAAACTTTTCCTGTGTTGCTATTGTACGTCCTAGCGAACTGGCAGCTAGATATCTTATGTCTGCTGATTGTAGCTTCTTTAATGATTGGGCTGTTGGTTCTGGATTACCTAGCAATAAACTTATTGTTGCTCAAGAAGATGCTAATATTCCTGAGCCAAATATGCAAACAGGGTGGACGAAGACCAATACCCAAGAAGAGGCTTTAAATACTGAAGGAGGAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGCAAATTCTTCTGACTCTGAGGAAGATGCAATTGACGATCATGAATTGAATGCGATAAACTCTACATCTGAAAGTTTCCCTTCTAATGTTCAGGCTTCCCATGCTAATCCTATAACTACACATGATAAAGATGGTATTCTTTCAGAGAGCGCCAGTTACGAAACACAAATATTTGAGGTTAATTTGAGTCAGCCTTGTGAACAATCATCTGAGGAACAGGATTATAAAATGACTTCAGAAGCTGCATTTGAAAATACAAGGCCAGTGCTTTGTTCCATTGCATATAGTTCCCAAGATGCTAATAATGCTGAAAAGTCACTGTCGGCTGAAGCCATGGTTGCTGTCAATCATAAAAATGCTTTATTGGCACCGCAATGTGACGAAGACTCGTCTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCACATAGTGCTCTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAGGCAAAGTTGGGGGCAGAAGATTTAGGAATTGATTATACATGGAAGAATATTGCCTACAGGCATGGCACCAAGGAAGATGAGGAGAGGATCCAGGCAGCTGTGGATAGTGAAGAAGCAATTCCCGGAAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAGTCTTAGCCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATCCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCATAGAACCAAAAGTCTATCAGAGAAGGACCGACCGGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTGTAATCAGGTCCATGCCCTTTTAGCAAAAATGGATTCTGAAGATGTTGAGGATGAGAAAATTTTATATAGATTGTTATCGCCTGATGTGAAAACTGAGAGATCGGGAAGTACCCCCAAAACTGAAACGACAAAATCCGGTAGGAAAAGGAAAACGACCTTAAACAGTGGACGGACCAGGAAAGGAAGTTTTGTTGAAAAAGATGCGGTTTTGGATAATTCCATTGAAGATAAACCCAATCCTCAGAGAAGGAGGATTCTTAGAAGCAAGCAAGCTAGGGGTGTTGAGAAAGATGGTGTAGCTTTGCATAGGGATTGTTCTTCATATCGTCGTAGAAAACCTATGGGCAAACAAAAAAATTGCACAGAAAGTGATGTAGTTTCTGATGATCCGCATGAAGATGATTATCACATGCAACATAGAAGGAGTTTTAATGTCAAAAAAGCTAATTTTATTGACAATGATGTGGTTTCAGATGATGCAGTGGACTATGATTCCGATTGTCATCAGATGGGAGAACTTAGAAACAAGCAAGTTGAAGATACAGAGAGAGACTCAATTTCAGTGGATTCTTTGAATGTCGATTCTCCTCAGTTGCACATAGAGACTTCTAGAAGCAAGCATGCCAACTTCACTAGTGAAGAAGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAGCAACACAAGAGAATTCCTAAAAGCAGTAAAGGAAATTCCCTTGCTGAAAAAGATTCAGTGATATCAGATGACCAACTGGAGCTGAACATCCAGAAACAGCGCCGGGGTAATTCTAGAAGTAGGAAAGCCAAATACCTCCATGAAGATGATATTGTATCGGATAACCAAACAAATATCTATTCTCGCAAGTACAAAAGAAGAACAGTTAAAGTCAGGCAAGCCAAATGTGTAGCAAGGGAAGATGTTATGTCTGACAACCAATCGGAAGACACCTTTCAAAAGCAGAAACCAATAATTTCTAGAAGGAAAAACAAAGGCATTGGTAGAGAATTTAAAAATGAATCGTCTGATGACCAACTTGATCACTTTCAGAAGCAGCAGCGAAATATTCCCAAGAGCAGGAGGCACACCATACAGACTGATGAAGAAATTATTGATGACTTGGCCGACGACAATGCCTGTCTGCTGCATAGAACTTCTAAAAGGAAGAAAGCTAAATGCAAGGATGAAGATGATACGAGTTTAGATAATGAAATGGAAGATGATTCTCTTCAGCAGCACAGAACTCTTCCAAGTAAACAATCTAAACCAAAGACACTTAAACAGGTGAAACAATCCAAATCTCTCTGGATGAAAAACCAGACACCTCGGCCAGTGAAACAAGGGGCTCAGATGCTGATGAAATCGAAGGCTGCTCATTTGCGAAATAAACAATGTGGTAACTCCAGAGAGCCTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGACTCCCAAAAGCTCAGGAGTCTGAAGTAAAATCAAAAGACAAGCAAACCAAAAGGAAAAGGACAAAGGACGCCACAGCAGCTACTATCGTTTCAGCTTGCAATGCCAAAACAGAGGACGAGGAAGCAGAATATCAGTGTGACATCGAGGGATGCAGCATGAGTTTTGAGTCAAAACAGGAGCTGCTGCATCATAAGAAAAATATCTGTCCAGTAAAAGGTTGCGGGAAAAAGTTCTTCTCACATAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCGCTCAAGTGTCCTTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGGACTGAGCATATCCGAGTCCACACTGGTGCACGTCCTTATGTATGTGCAGAGCCAGGTTGTGCACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGGAAGACTGGTCATTTAGCTAAGAAGAGTCGTCAATAA 4644 0.4287 MVVSDLNGDVFPWLKSMPVAPEYRPTAAEFEDPIGYIFKIEKEASQYGICKIVPPFPPSPKKTAIANLNRSLVNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFAEFEAKAKWFEKSYLKKLNKKAGGNGGVSALETETMFWKATVDKPFSVEYANDMPGSAFSAQCRYAGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESPVVLLPRSSVDISICSKLRVGCQQQKVNPEFSINVCNSKGMNSSKGFVSDDLVLGKGISSFDANGNTPPSSSKQLQTGNNSETNQGNGLSDQRLFSCVTCGLLNFSCVAIVRPSELAARYLMSADCSFFNDWAVGSGLPSNKLIVAQEDANIPEPNMQTGWTKTNTQEEALNTEGGNGNTALALLASAYANSSDSEEDAIDDHELNAINSTSESFPSNVQASHANPITTHDKDGILSESASYETQIFEVNLSQPCEQSSEEQDYKMTSEAAFENTRPVLCSIAYSSQDANNAEKSLSAEAMVAVNHKNALLAPQCDEDSSRMHVFCLEHAVEAEQQLRPIGGAHIVLLCHPDYPKIEAEAKLGAEDLGIDYTWKNIAYRHGTKEDEERIQAAVDSEEAIPGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNPVIYYAFGRSSPASSPIEPKVYQRRTDRQKKVVAGKWCGKVWMCNQVHALLAKMDSEDVEDEKILYRLLSPDVKTERSGSTPKTETTKSGRKRKTTLNSGRTRKGSFVEKDAVLDNSIEDKPNPQRRRILRSKQARGVEKDGVALHRDCSSYRRRKPMGKQKNCTESDVVSDDPHEDDYHMQHRRSFNVKKANFIDNDVVSDDAVDYDSDCHQMGELRNKQVEDTERDSISVDSLNVDSPQLHIETSRSKHANFTSEEDAISDDQMENGCQKQHKRIPKSSKGNSLAEKDSVISDDQLELNIQKQRRGNSRSRKAKYLHEDDIVSDNQTNIYSRKYKRRTVKVRQAKCVAREDVMSDNQSEDTFQKQKPIISRRKNKGIGREFKNESSDDQLDHFQKQQRNIPKSRRHTIQTDEEIIDDLADDNACLLHRTSKRKKAKCKDEDDTSLDNEMEDDSLQQHRTLPSKQSKPKTLKQVKQSKSLWMKNQTPRPVKQGAQMLMKSKAAHLRNKQCGNSREPSLDMEEEEEGGPSTRLRKRLPKAQESEVKSKDKQTKRKRTKDATAATIVSACNAKTEDEEAEYQCDIEGCSMSFESKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCAQTFRFVSDFSRHKRKTGHLAKKSRQ 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01926 1547 Gene3D Cupin 13 351 - -
Vifa2g01926 1547 FunFam Probable lysine-specific demethylase ELF6 13 351 - -
Vifa2g01926 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1508 IPR013087 -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1225 1260 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 955 992 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 924 992 - -
Vifa2g01926 1547 Gene3D Classic Zinc Finger 1452 1538 - -
Vifa2g01926 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1470 1512 IPR036236 -
Vifa2g01926 1547 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Vifa2g01926 1547 SMART cupin_9 178 347 IPR003347 -
Vifa2g01926 1547 ProSiteProfiles JmjC domain profile. 178 347 IPR003347 -
Vifa2g01926 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1454 1483 IPR013087 -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1226 1260 - -
Vifa2g01926 1547 FunFam Probable lysine-specific demethylase ELF6 1481 1510 - -
Vifa2g01926 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1514 1545 IPR013087 -
Vifa2g01926 1547 Pfam JmjC domain, hydroxylase 211 329 IPR003347 -
Vifa2g01926 1547 SMART c2h2final6 1514 1540 IPR013087 -
Vifa2g01926 1547 SMART c2h2final6 1484 1508 IPR013087 -
Vifa2g01926 1547 SMART c2h2final6 1431 1453 IPR013087 -
Vifa2g01926 1547 SMART c2h2final6 1454 1478 IPR013087 -
Vifa2g01926 1547 SUPERFAMILY beta-beta-alpha zinc fingers 1502 1536 IPR036236 -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1098 1143 - -
Vifa2g01926 1547 SMART JmjN_1 19 60 IPR003349 -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1005 1026 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 929 943 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 481 506 - -
Vifa2g01926 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1516 1540 IPR013087 -
Vifa2g01926 1547 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1191 - -
Vifa2g01926 1547 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1513 IPR013087 -
Vifa2g01926 1547 SUPERFAMILY Clavaminate synthase-like 192 361 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1376 1411 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1311 1343 - -
Vifa2g01926 1547 MobiDBLite consensus disorder prediction 1283 1411 - -
Vifa2g01926 1547 ProSitePatterns Zinc finger C2H2 type domain signature. 1456 1478 IPR013087 -
Vifa2g01926 1547 Pfam jmjN domain 21 54 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01926 Vifa-Chr2 498819390 498827475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01926 338 979 C2H2 Transcription Factor Family AT3G48430 43.741 1.40e-150 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g01926 JmjC 1.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01926 - - psat:127084261 2777.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01926 2 498819390 498827475 Vifa2g01926 2 498819390 498827475 ECH