Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01925 ATGGAACCCTCTCAACAATCCAAATCCATCGATTCCTCCATCAAAGACCCACTATTGATTCCTGAACCCTCAGATCTCAATCACGTGACCCAGCTTGACGAGGAGCTTCAAAACAAGTTGGATTTGAAAGATGATGACGAAATTCATGAGAAAGGTTCAAACTTTGAAGTTGTTGCTGTAGAATCTGAAAAGGGTCAAGAGTGTCATAATGATGATGGTTGGAATGGTGACGATGATGGGTGGAATGGGGATGATGAGGTGAATGACTGGGTGGAGAATGTGAATGAGAATGTTGTTGTTAGTGGAGAAGTTGATCAAGTGGAGAACAAGGATGAAAGAAGCAATGGTAATGGTAGAGCTGAACTGTACCCACTGAGGCCTGAAGCTGAAGACTGTTCCTTTTATCTCAAGACTGGGACTTGCAAATTTGGATCCAATTGCAAGTTTAATCACCCTCTTAGGAGAAAAAACTCGGCTTTTAAAGAGAGAGCGGGAGAAAGAGATGAATTGGAGAAAAGAGCAGGCCAGACAGAATGCAAGTATTATTCAAGGTCAGGGGGTTGTATGTTTGGAAAGGATTGTAAATTTGATCACACTAGAGGAAAGTATTCAGCCGTCCAAGTTTTAGAGTTTAACTTCCTCGGACTACCTATTCGTTTGGGTGAGAAAGAGTGTCCCTATTACATGCAAACTGGCTCTTGTAAGTTTGGAGCAACCTGCAAGTTTAATCATCCTGATCCGACATCTGTTGTAGGATATGATTCCACTTCAGCATATGGTAATGGAAGTTCTATTTCATTACACAATGTATCACAGACATCTTCTACCAGAAAATTCAATGAAACTGCTCCATTTGTGCCAATCATAATTTCACCGACTCCGGTGGTTTCTCCTCGAAGTTCTGACTGGAATGGATATCAGGTACCTGTCTATTTATCAGAGAGGGGTATGCATCCACCTGCACCATATGCCGTGAACAACCCAGCTATTGAAACAAATGTTCATAAGCACCGTCATAAGCAGACGTCTGTTGAAGAGTTTCCAGAAAGACCTGGTGAACCTGAGTGTAGTTTCTTCTTAAAAACTGGGGACTGCAAATTTAAGTTCCATTGCAAATTTCACCATCCAAAGAATCGGATTGCAAGATCACCTCCTTGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATGCATGCACGCATTACAGCCGATATGGAATTTGCAAGTTTGGACCTGCCTGTAAGTATGACCACCCGATAAACATGCCGCCCCCGACTATGCCTGGACATTATCAACAACCCTCTTACACAAACTCAGCAAGTGTTGAGGAGGCAGGAAACGGAGGTGCTAGTGATGCAAAAAGTCAATAG 1380 0.4297 MEPSQQSKSIDSSIKDPLLIPEPSDLNHVTQLDEELQNKLDLKDDDEIHEKGSNFEVVAVESEKGQECHNDDGWNGDDDGWNGDDEVNDWVENVNENVVVSGEVDQVENKDERSNGNGRAELYPLRPEAEDCSFYLKTGTCKFGSNCKFNHPLRRKNSAFKERAGERDELEKRAGQTECKYYSRSGGCMFGKDCKFDHTRGKYSAVQVLEFNFLGLPIRLGEKECPYYMQTGSCKFGATCKFNHPDPTSVVGYDSTSAYGNGSSISLHNVSQTSSTRKFNETAPFVPIIISPTPVVSPRSSDWNGYQVPVYLSERGMHPPAPYAVNNPAIETNVHKHRHKQTSVEEFPERPGEPECSFFLKTGDCKFKFHCKFHHPKNRIARSPPCNLSDKGLPLRPGQNACTHYSRYGICKFGPACKYDHPINMPPPTMPGHYQQPSYTNSASVEEAGNGGASDAKSQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01925 459 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Vifa2g01925 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 198 IPR000571 GO:0046872
Vifa2g01925 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 222 245 IPR000571 GO:0046872
Vifa2g01925 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 398 422 IPR000571 GO:0046872
Vifa2g01925 459 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 152 IPR000571 GO:0046872
Vifa2g01925 459 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
Vifa2g01925 459 ProSiteProfiles Zinc finger C3H1-type profile. 396 424 IPR000571 GO:0046872
Vifa2g01925 459 MobiDBLite consensus disorder prediction 428 459 - -
Vifa2g01925 459 Gene3D - 87 163 - -
Vifa2g01925 459 MobiDBLite consensus disorder prediction 434 459 - -
Vifa2g01925 459 SUPERFAMILY CCCH zinc finger 220 246 IPR036855 GO:0046872
Vifa2g01925 459 PANTHER PROTEIN PHOSPHATASE RELATED 27 444 - -
Vifa2g01925 459 Pfam RNA-binding, Nab2-type zinc finger 356 376 - -
Vifa2g01925 459 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vifa2g01925 459 SUPERFAMILY CCCH zinc finger 177 203 IPR036855 GO:0046872
Vifa2g01925 459 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vifa2g01925 459 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Vifa2g01925 459 SMART c3hfinal6 396 423 IPR000571 GO:0046872
Vifa2g01925 459 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Vifa2g01925 459 SMART c3hfinal6 126 153 IPR000571 GO:0046872
Vifa2g01925 459 Gene3D - 169 257 - -
Vifa2g01925 459 SUPERFAMILY CCCH zinc finger 395 422 IPR036855 GO:0046872
Vifa2g01925 459 MobiDBLite consensus disorder prediction 1 28 - -
Vifa2g01925 459 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Vifa2g01925 459 Gene3D - 352 429 - -
Vifa2g01925 459 SUPERFAMILY CCCH zinc finger 126 154 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01925 Vifa-Chr2 498397900 498401053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01925 346 439 C2H2 Transcription Factor Family AT3G02830 45.745 5.73e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g01925 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01925 - - gmx:100809626 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01925 2 498397900 498401053 Vifa2g01925 2 498397900 498401053 ECH
Vifa2g01925 2 498397900 498401053 Vifa2g01925 2 498397900 498401053 PCT