Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01922 ATGGGTCGCAATCCTAAAGTGTGTACCTCTTGTATCCACCACTGTCGAATGTTTCATCGTCCTCACCCAACAACCACAACCCAACCTACCTCTTTCTACAAGTTCATGCTTCATCAAAATCATCTCAAACTTCTGTATCTTCCTCCTAAGTTAAAACGCACTATGTCTGGTTTGGTTGGTAAGAACATCACTCTTGAGGATTCAAGTGGTGGTAGATTTGATGTAACTGTATCAGATGTTGATGGTTCTTTAGCTTTTAAGGAAGGATGGAATGTTTTCTCACTGGATCACAAGCTTGAAGTCGGGGATTTAGTGGTATTCAATTGCATTGACAAGTTGAAATTTGGTGTCAAGATCTATGATGAATCTGTGTGTGAAAGGGTTGATTTTTCTAAGAGAAGGATTAGGAAAAAGAGAGATAGAAATGGTGAGTTTATTAGAAAAGATCCAAATGCCTCACTTGCTAACTTCCAGACTGAAAATGTTTTAGAAAATGGTAATGTGGATGGAAGGGTTGAATATGTGCGTGCATTAGGATATATTGAAGACACATGTTTCACAACAAGCCATGCATTTCAAAATGATGCATCCTTTTATAACAAAGATCCTATGTTTGAAGAAGTGTTGGGTACAGGAGATACCTCATATGCATTAAAACTTGAGTTGCTTGGAAGGAACAATTGTGCAATGCAGCACAAATATCCTGCTATGACACTAGTAGAAAATAATGAGCGCGAGTCCAAAGGAGAAGTTCAAGAGGGGAGTGATCAGGCGGCAATTTCCAAAGGAAAACATGCCTTACATGCATTCGAACTTGAAACTTCTGGAAGAAACAATTCTCTTGGTGATTCCGACAAAATTGCATATGAAAAGACTTCTATTTTGAAACATAAAGAAAACAAAGAGGGCAAATCCTTTTTCTCCAAAAAGGAAATTCAAGAGTGCCAGTTTGCTGAAGGCTTAGGTGAGAGGAAGAAAGTGCCTATGAACATGAATTCCAAAAGGCGGCGCCCTTTCAATGATAAATTGTGTGCAACAGAGTTGCCAAAGGTTAAGGGAAAGCTTAATCAAAATAATGAAGGTCACTTTGAAACTGGAGCAACTATTTCCTGTGAGAATACCAAAGAGAGGTTCAATAAAAAATCTAATCTCTTAGATGATTGTATTTACCTAGGTGAGACGCCGGTGGAAACGACTCCCAAATTATGCAGTATCGACGATAAAATAAATGTGACAGGGTTGACAGAGGTTAAGAGAGATTTGAAGGAAGATAAAACTACTGCAACTGTCACTGATAACAATTCTCTTGAATTGTCAGAACCCTTGCCGTTATCTTGTGTAGGGAAAGGATCGAAGAAAATGGTGGTGTATCTTAAGGATCCTTTGACGAGAAAGTGGCCGGTCCTTTGCAATGAAAAAACTAGGTTCACAAGTGGATGGTCAGATTTTCAAAGAGCAAATAGTATTAAAACCGGCGATGTGTGTGTTTTCAAGGTCGAAAACAAGTATGAAAGTATCGTCGCTGTACATACAGACCATAAGTGA 1545 0.3871 MGRNPKVCTSCIHHCRMFHRPHPTTTTQPTSFYKFMLHQNHLKLLYLPPKLKRTMSGLVGKNITLEDSSGGRFDVTVSDVDGSLAFKEGWNVFSLDHKLEVGDLVVFNCIDKLKFGVKIYDESVCERVDFSKRRIRKKRDRNGEFIRKDPNASLANFQTENVLENGNVDGRVEYVRALGYIEDTCFTTSHAFQNDASFYNKDPMFEEVLGTGDTSYALKLELLGRNNCAMQHKYPAMTLVENNERESKGEVQEGSDQAAISKGKHALHAFELETSGRNNSLGDSDKIAYEKTSILKHKENKEGKSFFSKKEIQECQFAEGLGERKKVPMNMNSKRRRPFNDKLCATELPKVKGKLNQNNEGHFETGATISCENTKERFNKKSNLLDDCIYLGETPVETTPKLCSIDDKINVTGLTEVKRDLKEDKTTATVTDNNSLELSEPLPLSCVGKGSKKMVVYLKDPLTRKWPVLCNEKTRFTSGWSDFQRANSIKTGDVCVFKVENKYESIVAVHTDHK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01922 514 CDD B3_DNA 60 121 IPR003340 GO:0003677
Vifa2g01922 514 Gene3D - 24 125 IPR015300 -
Vifa2g01922 514 Gene3D - 425 512 IPR015300 -
Vifa2g01922 514 SMART B3_2 32 123 IPR003340 GO:0003677
Vifa2g01922 514 SMART B3_2 426 512 IPR003340 GO:0003677
Vifa2g01922 514 CDD B3_DNA 442 498 IPR003340 GO:0003677
Vifa2g01922 514 SUPERFAMILY DNA-binding pseudobarrel domain 27 125 IPR015300 -
Vifa2g01922 514 ProSiteProfiles B3 DNA-binding domain profile. 421 513 IPR003340 GO:0003677
Vifa2g01922 514 PANTHER B3 DOMAIN-CONTAINING 24 501 - -
Vifa2g01922 514 Pfam B3 DNA binding domain 433 502 IPR003340 GO:0003677
Vifa2g01922 514 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Vifa2g01922 514 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vifa2g01922 514 SUPERFAMILY DNA-binding pseudobarrel domain 448 510 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01922 47 126 B3 DNA Binding Superfamily AT3G18960 26.250 8.74e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g01922 B3 5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01922 - - psat:127084256 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01922 2 497592819 497595094 Vifa2g01922 2 497592819 497595094 ECH