Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01907 ATGGCACAGCCTAACGCCACCACCATCGACCCAAACTCCGGTTTCTCCCCTCATTCTAGAATCTTCCATAGCCTCCGTCCCAACGTCCCTCTCCCTCCACCTTCTCTCCCTCTCTCCCTCACCGAATACGCACTCTCTCTCATCCCTACCACCGCCCATGAAAAAAACATCGCCGCCGTCATAGACTCCGCCACCGATAACCACCTCTCTTACTCCACCTTCATCCGCCAAATCAAATCCCTCGCCTCATCTCTCCAATCACACACCTCTCTCTCCAAAGGCCACGTCGCATTAATCCTCACTCCTACTTCCATACACGTCCCCGTACTCTATTTCTCCCTCCTCTCCCTCGGCGTCACCATCGCGCCTGCTAACCCGCTCAGCTCCCAATCCGAGTTAACTCACATCGTTCATCTCACAAAACCAGTCATCGCATTCGCATCTTCCTCAACCGCTTCCAAAATCCCCAACCTCCCTTTCGGCACAGTCATACTCGATTCTCCTTCGTTCCTTTCCATGCTCGATTCCAACTCCGAGCCTCACCGAGTCGAAACGAGTCAATCAGACACAGCTGCGATTCTCTTCTCTTCAGGAACCACCGGACGAGTTAAAGGCGTGTTGTTAACTCACCGTAACTTCATTGCATTGGTCGGAGGGTTTTGTTCTCTGAAGCATGTTTACGATGACGGCCTTGAAAATGAACCGCATGCTGTGTCGCTGTTTCCGCTTCCGCTTTTTCACGTTTTTGGATTTTTCATGATGGTGAGGGCTTTGGCTTTGGGGGACACTCTGGTGTTCATGGAGAGGTTTGATTTTGAAGGAATGTTGAAGATTGTGGAGAAGTATAGGGTTGTTTATATGCCGGTGTCGCCGCCGTTAGTTACGGCGTTTGCTAAGTCGGATTTGGTGAAGAAATATGATCTTAGTTCGATTCGGCTGTTGGGGTGTGGTGGCGCGCCGCTTGGTAAGCAAGTTGCGGAGAGTTTCAAATCAAAATTCCCTAATGTTGATATTGTTCAGGGCTATGGTCTTACTGAAAGTGGAGGAGGGGTAGCGAGAATGATAGGTTTTGATGAGGCTAAGCGCCATGCTTCTGTGGGTCGACTAGCTGAAAATATGGAGGCTAAGATAGTTGACCCTGTTACTGGAGAGGCATTATCTCCTGGCCAAAGAGGGGAGCTTTGGATTCGAGGACCGACAATCATGAAAGGTTACGTAGAAGATGACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGTTGAAAACTGGCGATCTATGTTATTTTGACTCGGATGGTTTTCTATTCATTGTAGATAGATTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAACACATACTTCTTAGTAATCCTGAAATTGCAGATGCCGCAGTAGTTCCGTATCCTGATGAAGATGCTGGACAGATTCCAATGGCTTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGAAGCTCAGATCATGGACTATGTGGCAAAGCAGGTGGCACCATACAAGAAGATAAGACGTGTTTCTTTTATTAACTCTATACCAAAATCTCCGGCAGGCAAAATTTTAAGAAGAGAATTAGTGGCTATTGCTCTAAATAGTGGTTCATCCAAATTGTGA 1653 0.4749 MAQPNATTIDPNSGFSPHSRIFHSLRPNVPLPPPSLPLSLTEYALSLIPTTAHEKNIAAVIDSATDNHLSYSTFIRQIKSLASSLQSHTSLSKGHVALILTPTSIHVPVLYFSLLSLGVTIAPANPLSSQSELTHIVHLTKPVIAFASSSTASKIPNLPFGTVILDSPSFLSMLDSNSEPHRVETSQSDTAAILFSSGTTGRVKGVLLTHRNFIALVGGFCSLKHVYDDGLENEPHAVSLFPLPLFHVFGFFMMVRALALGDTLVFMERFDFEGMLKIVEKYRVVYMPVSPPLVTAFAKSDLVKKYDLSSIRLLGCGGAPLGKQVAESFKSKFPNVDIVQGYGLTESGGGVARMIGFDEAKRHASVGRLAENMEAKIVDPVTGEALSPGQRGELWIRGPTIMKGYVEDDKATVETLDSEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHILLSNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITEAQIMDYVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVAIALNSGSSKL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01907 550 Gene3D - 444 545 IPR045851 -
Vifa2g01907 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 539 - -
Vifa2g01907 550 Gene3D - 27 443 IPR042099 -
Vifa2g01907 550 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Vifa2g01907 550 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Vifa2g01907 550 Pfam AMP-binding enzyme 53 448 IPR000873 -
Vifa2g01907 550 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Vifa2g01907 550 SUPERFAMILY Acetyl-CoA synthetase-like 59 544 - -
Vifa2g01907 550 CDD 4CL 59 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01907 Vifa-Chr2 495133144 495136564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01907 5 550 Monolignol Biosynthesis Gene Families AT5G63380 60.428 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01907 K01904 - gmx:100804044 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01907 2 495133144 495136564 Vifa2g01907 2 495133144 495136564 ECH