LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g01907	ATGGCACAGCCTAACGCCACCACCATCGACCCAAACTCCGGTTTCTCCCCTCATTCTAGAATCTTCCATAGCCTCCGTCCCAACGTCCCTCTCCCTCCACCTTCTCTCCCTCTCTCCCTCACCGAATACGCACTCTCTCTCATCCCTACCACCGCCCATGAAAAAAACATCGCCGCCGTCATAGACTCCGCCACCGATAACCACCTCTCTTACTCCACCTTCATCCGCCAAATCAAATCCCTCGCCTCATCTCTCCAATCACACACCTCTCTCTCCAAAGGCCACGTCGCATTAATCCTCACTCCTACTTCCATACACGTCCCCGTACTCTATTTCTCCCTCCTCTCCCTCGGCGTCACCATCGCGCCTGCTAACCCGCTCAGCTCCCAATCCGAGTTAACTCACATCGTTCATCTCACAAAACCAGTCATCGCATTCGCATCTTCCTCAACCGCTTCCAAAATCCCCAACCTCCCTTTCGGCACAGTCATACTCGATTCTCCTTCGTTCCTTTCCATGCTCGATTCCAACTCCGAGCCTCACCGAGTCGAAACGAGTCAATCAGACACAGCTGCGATTCTCTTCTCTTCAGGAACCACCGGACGAGTTAAAGGCGTGTTGTTAACTCACCGTAACTTCATTGCATTGGTCGGAGGGTTTTGTTCTCTGAAGCATGTTTACGATGACGGCCTTGAAAATGAACCGCATGCTGTGTCGCTGTTTCCGCTTCCGCTTTTTCACGTTTTTGGATTTTTCATGATGGTGAGGGCTTTGGCTTTGGGGGACACTCTGGTGTTCATGGAGAGGTTTGATTTTGAAGGAATGTTGAAGATTGTGGAGAAGTATAGGGTTGTTTATATGCCGGTGTCGCCGCCGTTAGTTACGGCGTTTGCTAAGTCGGATTTGGTGAAGAAATATGATCTTAGTTCGATTCGGCTGTTGGGGTGTGGTGGCGCGCCGCTTGGTAAGCAAGTTGCGGAGAGTTTCAAATCAAAATTCCCTAATGTTGATATTGTTCAGGGCTATGGTCTTACTGAAAGTGGAGGAGGGGTAGCGAGAATGATAGGTTTTGATGAGGCTAAGCGCCATGCTTCTGTGGGTCGACTAGCTGAAAATATGGAGGCTAAGATAGTTGACCCTGTTACTGGAGAGGCATTATCTCCTGGCCAAAGAGGGGAGCTTTGGATTCGAGGACCGACAATCATGAAAGGTTACGTAGAAGATGACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGTTGAAAACTGGCGATCTATGTTATTTTGACTCGGATGGTTTTCTATTCATTGTAGATAGATTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAACACATACTTCTTAGTAATCCTGAAATTGCAGATGCCGCAGTAGTTCCGTATCCTGATGAAGATGCTGGACAGATTCCAATGGCTTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGAAGCTCAGATCATGGACTATGTGGCAAAGCAGGTGGCACCATACAAGAAGATAAGACGTGTTTCTTTTATTAACTCTATACCAAAATCTCCGGCAGGCAAAATTTTAAGAAGAGAATTAGTGGCTATTGCTCTAAATAGTGGTTCATCCAAATTGTGA	1653	0.4749	MAQPNATTIDPNSGFSPHSRIFHSLRPNVPLPPPSLPLSLTEYALSLIPTTAHEKNIAAVIDSATDNHLSYSTFIRQIKSLASSLQSHTSLSKGHVALILTPTSIHVPVLYFSLLSLGVTIAPANPLSSQSELTHIVHLTKPVIAFASSSTASKIPNLPFGTVILDSPSFLSMLDSNSEPHRVETSQSDTAAILFSSGTTGRVKGVLLTHRNFIALVGGFCSLKHVYDDGLENEPHAVSLFPLPLFHVFGFFMMVRALALGDTLVFMERFDFEGMLKIVEKYRVVYMPVSPPLVTAFAKSDLVKKYDLSSIRLLGCGGAPLGKQVAESFKSKFPNVDIVQGYGLTESGGGVARMIGFDEAKRHASVGRLAENMEAKIVDPVTGEALSPGQRGELWIRGPTIMKGYVEDDKATVETLDSEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHILLSNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITEAQIMDYVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVAIALNSGSSKL	550

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g01907	550	Gene3D	-	444	545	IPR045851	-
Vifa2g01907	550	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	16	539	-	-
Vifa2g01907	550	Gene3D	-	27	443	IPR042099	-
Vifa2g01907	550	ProSitePatterns	Putative AMP-binding domain signature.	193	204	IPR020845	-
Vifa2g01907	550	FunFam	4-coumarate--CoA ligase 2	444	545	-	-
Vifa2g01907	550	Pfam	AMP-binding enzyme	53	448	IPR000873	-
Vifa2g01907	550	Pfam	AMP-binding enzyme C-terminal domain	457	532	IPR025110	-
Vifa2g01907	550	SUPERFAMILY	Acetyl-CoA synthetase-like	59	544	-	-
Vifa2g01907	550	CDD	4CL	59	538	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g01907	Vifa-Chr2	495133144	495136564	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g01907	5	550	Monolignol Biosynthesis Gene Families	AT5G63380	60.428	0.0	679

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g01907	K01904		-	gmx:100804044	834.328

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g01907	2	495133144	495136564	Vifa2g01907	2	495133144	495136564	ECH

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