Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01905 ATGGAGTTTCATGGTTTGGTTTTGCTATTCTGCTATGTTTGGTGTGTCATTTTTGTGGGAATTTGCAGTGGTCAGTTACAATCCTCTCAGACTCAAGTTCTTCTACAATTACAAAAGCACTTAGAATTTCCAACACAGTTAGAAATATGGAGAGATCATAGGGAAGAAATTTGCTTTATTTCTTCTACACAAGTGAAAGTTACATGCAAGGACAATTTTGTCACAGAGCTAACTATCTTTGGTGATAAGCCAAACAATGGTAGAGATTTTGATGGATTTGCTATTCCAAATCAAACACTGACACAAACCTTCTCATTGGACTCATTTGTGGCCACTCTTGCAAGGCTAACTAGCTTGAAAGTTCTTCATCTTGTTTCTTTAGGAATTTGGGGACCACTTCCTGATACAATTCATAGACTATTCTCACTTGAGTATTTGGATTTGAGTTTGAATTTTCTTTATGGATCGATCCCTCCGAAAATTTCTACTATCTTCAACCTTCAAACTCTTATTTTGAGTGATAACTTCTTCAATGGTACTGTCCCTAACCTGTTCAATTCATCAAATACTCTCACAGTTCTTAGTTTGAAGCATAATAAGTTGAAGGGTCCATTTCCATTTTCGATCCTTAGTATCAAAACTTTGACTAACATTGACATGTCGAGAAATCGGTTATCAGGAAGCTTGCGAGATTTTACTGATATGAGTAGCTTGGAAGAGCTAGATTTAAGAGAAAATGAATTCGATTCTTCGCTACCTGAAATGCCGAAAGGGTTGATAACTCTTTTCCTCAACCGGAACTTCTTTTCAGGTCAAATTCCAAAACAATATGGTCAACTAAATAGTCTTCAGCAGCTTGATATTTCCTTCAATAGAATAACAGGAACTACTCCTTCTGAACTTTTCTCTTTGCCGAAAATTAGTTACTTGAATTTGGGATCCAATGTGTTGAGTGGAACACTTGAAAATCACATGAAATGTGGCCAAAATCTTAGTTTTGTTGATATATCAAACAATAAGTTCGTTGGAGCTTTGCCTTCTTCTCTAAGAAATGAGTCAGAAAATAGAATCGTTAAGAGCGATGGAAACTGTTTATCTGGAAGTTTGCAGCATCAACATGAAGTATCCTATTGTGCAGAAGCTCGTGGAAAGGCGAAGTCGTATCGATTTGGAGTTTTCGTTGGCGTCATTGTTGGAATTCTTGTTATCATTGTGCTTTTGGGCTTATGCATTGTTTTTACTTGTAAATGGTTGTACTCTAAGGGGATTTCGGAGCAGCACCTATTGAATAAATCAGTTCAAGATAGCTATACAGCCGGATTCTCATCCGAACTTATTGCAAATGCAAGGTATGTTTCTGAAGCTGCAAAGTTAGGAAGAGAAGATCTTCCTTCGTGTCGATCATATTCGTTGGAAGAGCTTATGAATGCGACGAATAACTTTGACAATTCTACTTTTCTTGGCGAAAATATATATGGGAAGCTGTACAAAGGGAAACTGGAGAGTGGGATACCTGTGGTGATAAGATGCATACCTTTGTCGAAAAAGTACTCGGTTCGGAATTTCAAACTGAGGCTGGATTTGCTTGCAAAGCTTCGCCACGCGCATTTGGTGTCTCTTTTGGGACACTGCATTGATGGTATTTTAGGCGAGCGTAACGACTCGAAGGTGTTTCTTGTTTATGAATGCGTGTCAAATGGGAATTTCCAAACTTATCTCTCAGGAGATAGTTCAGGGAAGATTTTCAATTGGTCAGAGAGATTATCAGTTCTTATCAGTGTTGCTAAGGCAGTTCACTTCTTACACACTGGAATGATACCTGGTTTCTTCAAAAATAGACTTAAAACCAACAACATTTTGCTTAATGAAAATTCTATAGCAAAGTTGAGTGACTATGGATTGTCCATTATCTCAGAAGAAACTGATGCAAGTGAGGTAAAAGGTGAAAGCCCAAATTCATGGCAAACGAAAAAGTTAGAGGATGATATCTATAGCTTTGGATTCATATTACTTGAGGCACTTGTTGGACCTTCAATGTCAACTAAAAGAGAAGCAACTGTTCTAAATGCAATGGCTTCCTTCAATAATCAAGATGACTGGAAACAAACAGTGGATCCAGTTGTGCAAGCTACTTGCTGCAAAGAATCTCTATCAACTGTGATTTCTATAACCAACAAATGTATTTCTACCGAGCCATGGAGTCGACCATCGATCGAGGATATTCTTTGGAACTTGCAGTATGCTACTCAAGTCCAGAGAACAGCTGATGGTGATCACAGAATTTGA 2286 0.3788 MEFHGLVLLFCYVWCVIFVGICSGQLQSSQTQVLLQLQKHLEFPTQLEIWRDHREEICFISSTQVKVTCKDNFVTELTIFGDKPNNGRDFDGFAIPNQTLTQTFSLDSFVATLARLTSLKVLHLVSLGIWGPLPDTIHRLFSLEYLDLSLNFLYGSIPPKISTIFNLQTLILSDNFFNGTVPNLFNSSNTLTVLSLKHNKLKGPFPFSILSIKTLTNIDMSRNRLSGSLRDFTDMSSLEELDLRENEFDSSLPEMPKGLITLFLNRNFFSGQIPKQYGQLNSLQQLDISFNRITGTTPSELFSLPKISYLNLGSNVLSGTLENHMKCGQNLSFVDISNNKFVGALPSSLRNESENRIVKSDGNCLSGSLQHQHEVSYCAEARGKAKSYRFGVFVGVIVGILVIIVLLGLCIVFTCKWLYSKGISEQHLLNKSVQDSYTAGFSSELIANARYVSEAAKLGREDLPSCRSYSLEELMNATNNFDNSTFLGENIYGKLYKGKLESGIPVVIRCIPLSKKYSVRNFKLRLDLLAKLRHAHLVSLLGHCIDGILGERNDSKVFLVYECVSNGNFQTYLSGDSSGKIFNWSERLSVLISVAKAVHFLHTGMIPGFFKNRLKTNNILLNENSIAKLSDYGLSIISEETDASEVKGESPNSWQTKKLEDDIYSFGFILLEALVGPSMSTKREATVLNAMASFNNQDDWKQTVDPVVQATCCKESLSTVISITNKCISTEPWSRPSIEDILWNLQYATQVQRTADGDHRI 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01905 761 SUPERFAMILY L domain-like 107 354 - -
Vifa2g01905 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 259 383 - -
Vifa2g01905 761 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Vifa2g01905 761 Gene3D Ribonuclease Inhibitor 259 379 IPR032675 -
Vifa2g01905 761 Pfam Protein tyrosine and serine/threonine kinase 486 743 IPR001245 GO:0004672|GO:0006468
Vifa2g01905 761 PANTHER UNNAMED PRODUCT 109 677 - -
Vifa2g01905 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 761 - -
Vifa2g01905 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 257 - -
Vifa2g01905 761 Gene3D Phosphorylase Kinase; domain 1 444 562 - -
Vifa2g01905 761 Gene3D Transferase(Phosphotransferase) domain 1 564 759 - -
Vifa2g01905 761 SUPERFAMILY Protein kinase-like (PK-like) 464 746 IPR011009 -
Vifa2g01905 761 ProSiteProfiles Protein kinase domain profile. 481 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01905 Vifa-Chr2 494684756 494688130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01905 7 693 Miscellaneous Gene Families AT5G14210 49.714 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa2g01905 PK_Tyr_Ser-Thr 3.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01905 - - gmx:100802978 1129.01