Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01902 ATGATTCTAACAGATAATGAAAGTCAACATGTTGTGTTGATAGAAGATGAAGCCCTAGGAGAGAGAGACGGAACGGAGGAAAACATAATATCAAAAGGCATTTCGGCCGGTCCAATGGTCCGGCTCTATCGGACCGGTTCTCGGGTGGTTTTCGGTTCTGCAACTCCAAATACAGCCCTATGCATGAATGATCAAGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATCAGCATGGAAATATTTCGCCTTAAAAATTTAGAAAGTTTAGCTGAAAACACCTTGAAAGGGAAGATAAGAATTACCACGAGATGCCTATGGCTAGACAATGGGAAGCTGTTAGATGCACTATATAAAGCTGCTCATGCAGCGCTTTCTAGCTGTCCCGTTAAAAGCCCACTGCCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGAAAGTACAGTGGTAAACGGCCCGAAGTAATCGCCATTGCCATAGAAAACCCTGGAGCTGTTTTTGCTGATGAGATAAACACAAAATTGTCTGGCAAGTCCCATGTTGGTCCTGGAATATCAACATCAATAAAAGTAGTGGATGAACGTAGAAAGAAAAACCAGTCCACCACAACGCAAATAAGAGATGATAACATTGATATTAAAGGACTATTACCTGAGAAAGACACCACTACAAGTGGAGCTGAGGGCGATTTACCTGATTCAGCGGATTCAGATGAATTTTGGAAATCATTCATTGCATCATCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACGAAAAGAGTATAAGTCCAATCTGAAGCAAGATGATTCTGAAGACACTGGTGAAGCCAACTCTGAAGAAATGTCTAATGCTGAGCCAGAGTCATCAAAATCAATAAAGAACAATAAATGGAAAGCTAAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAGATTTAAAGTTGTGAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGACGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTGTGGACATCTTTGGTAATGAAATATGAGGAGATCAAGAATGGGAAGGATAGAAGAAAAAATTGGCAATATCTTGAAGACATGGAAAAGATAATGTCTAGCGACGAAGCACCGGCATCAAATTGA 1461 0.4066 MILTDNESQHVVLIEDEALGERDGTEENIISKGISAGPMVRLYRTGSRVVFGSATPNTALCMNDQEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRLKNLESLAENTLKGKIRITTRCLWLDNGKLLDALYKAAHAALSSCPVKSPLPHMERTVSEVLRKMVRKYSGKRPEVIAIAIENPGAVFADEINTKLSGKSHVGPGISTSIKVVDERRKKNQSTTTQIRDDNIDIKGLLPEKDTTTSGAEGDLPDSADSDEFWKSFIASSVEKSIKANNGYVSRKEYKSNLKQDDSEDTGEANSEEMSNAEPESSKSIKNNKWKAKEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVMKYEEIKNGKDRRKNWQYLEDMEKIMSSDEAPASN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01902 486 Gene3D - 44 128 IPR036866 -
Vifa2g01902 486 Pfam Myb/SANT-like DNA-binding domain 393 476 IPR044822 -
Vifa2g01902 486 PANTHER RIBONUCLEASE J 61 484 - -
Vifa2g01902 486 CDD GT1 393 458 - -
Vifa2g01902 486 ProSiteProfiles Myb-like domain profile. 387 451 IPR001005 -
Vifa2g01902 486 MobiDBLite consensus disorder prediction 360 392 - -
Vifa2g01902 486 MobiDBLite consensus disorder prediction 287 328 - -
Vifa2g01902 486 Gene3D - 395 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01902 Vifa-Chr2 494657341 494660815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01902 394 479 Trihelix Transcription Factor Family AT2G38250 31.818 6.03e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa2g01902 Myb_DNA-bind_4 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01902 - - lja:Lj0g3v0261399.2 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01902 2 494657341 494660815 Vifa2g01901 2 494657341 494660815 PCT