Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01901 ATGATTCTAACAGATAATGAAAGTCAACATGTTGTGTTGATAGAAGATGAAGCCCTAGGAGAGAGAGACGGAACGGAGGAAAACATAATATCAAAAGGCATTTCGGCCGGTCCAATGGTCCGGCTCTATCGGACCGGTTCTCGGGTGGTTTTCGGTTCTGCAACTCCAAATACAGCCCTATGCATGAATGATCAAGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATCAGCATGGAAATATTTCGCCTTAAAAATTTAGAAAGTTTAGCTGAAAACACCTTGAAAGGGAAGATAAGAATTACCACGAGATGCCTATGGCTAGACAATGGGAAGCTGTTAGATGCACTATATAAAGCTGCTCATGCAGCGCTTTCTAGCTGTCCCGTTAAAAGCCCACTGCCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGAAAGTACAGTGGTAAACGGCCCGAAGTAATCGCCATTGCCATAGAAAACCCTGGAGCTGTTTTTGCTGATGAGATAAACACAAAATTGTCTGGCAAGTCCCATGTTGGTCCTGGAATATCAACATCAATAAAAGTAGTGGATGAACGTAGAAAGAAAAACCAGTCCACCACAACGCAAATAAGAGATGATAACATTGATATTAAAGGACTATTACCTGAGAAAGACACCACTACAAGTGGAGCTGAGGGCGATTTACCTGATTCAGCGGATTCAGATGAATTTTGGAAATCATTCATTGCATCATCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACGAAAAGAGTATAAGTCCAATCTGAAGCAAGATGATTCTGAAGACACTGGTGAAGCCAACTCTGAAGAAATGTCTAATGCTGAGCCAGAGTCATCAAAATCAATAAAGAACAATAAATGGAAAGCTAAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAGATTTAAAGTTGTGAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGACGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTGTGGACATCTTTGGTAATGAAATATGAGCAGGAGATCAAGAATGGGAAGGATAGAAGAAAAAATTGGCAATATCTTGAAGACATGGAAAAGATAATGTCTAGCGACGAAGCACCGGCATCAAATTGA 1464 0.4071 MILTDNESQHVVLIEDEALGERDGTEENIISKGISAGPMVRLYRTGSRVVFGSATPNTALCMNDQEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRLKNLESLAENTLKGKIRITTRCLWLDNGKLLDALYKAAHAALSSCPVKSPLPHMERTVSEVLRKMVRKYSGKRPEVIAIAIENPGAVFADEINTKLSGKSHVGPGISTSIKVVDERRKKNQSTTTQIRDDNIDIKGLLPEKDTTTSGAEGDLPDSADSDEFWKSFIASSVEKSIKANNGYVSRKEYKSNLKQDDSEDTGEANSEEMSNAEPESSKSIKNNKWKAKEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVMKYEQEIKNGKDRRKNWQYLEDMEKIMSSDEAPASN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01901 487 CDD GT1 393 455 - -
Vifa2g01901 487 Gene3D - 395 456 - -
Vifa2g01901 487 Pfam Myb/SANT-like DNA-binding domain 393 477 IPR044822 -
Vifa2g01901 487 ProSiteProfiles Myb-like domain profile. 387 451 IPR001005 -
Vifa2g01901 487 Gene3D - 61 113 IPR036866 -
Vifa2g01901 487 MobiDBLite consensus disorder prediction 360 392 - -
Vifa2g01901 487 MobiDBLite consensus disorder prediction 287 328 - -
Vifa2g01901 487 PANTHER RIBONUCLEASE J 61 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01901 Vifa-Chr2 494657341 494660815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01901 394 480 Trihelix Transcription Factor Family AT2G38250 31.818 1.05e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa2g01901 Myb_DNA-bind_4 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01901 - - lja:Lj0g3v0261399.2 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01901 2 494657341 494660815 Vifa2g01901 2 494657341 494660815 ECH
Vifa2g01902 2 494657341 494660815 Vifa2g01901 2 494657341 494660815 PCT