Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01899 ATGGTTTCAACGAGACGCAACAGTGGTGGCGGATCTTTCCCCGCCGCTAAAAGACCTTCTTCATCTTCCGATGACAAACCGCCTTCTCCTTCACCTAAGCGCCAGAAGCCTGACAATGGTGCTGCTGCTGCTTCCTCGGAGAAACCGATATCGATATCTCCGACGGAGAATTCCAAGGATTTGCGTACTCCTGAGCCTCCCGCCGATCCAGGAGAATGTGCTCCCTCCGATGCTCAGATCGAAGAACCGGTAAATACCGATGATAAAATCGATGCAACACCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCTGATAAACCTAGGGCTTCGTTCTCTTCTTGGAGTATATATCAGAAACAAAATCCGATTCTCGAGTCTTCAGCTCCCTGGTGTCGGCTTCTGTCCCAGTCTGCTCAGCATCCAAATGTTTCCATTTCCATACCAAACTTCACTATTGGCTCAAGTAGAAATTGCAACTTTCATTTGAAGGATCATACAATAAGTGGGAATTTATGTAAAATCAAACACACACAGCGCGAGGGAGGTGATGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAACACCTGCTGTGCGCTTAACTCGGGTGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAGGTTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGCGTTGGTAAATTTATGCAGCTTGAAAGGAGAAGCGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCACACTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGTACAGAAGTTGAGCTTGATGGCCTGGAAGGCAACTCAACTCCAAATATAGGAACTGATAAAGCTGCTGATGCCGAGGCTAGCAACAAGGACTCTCCTATGGATTACGATCCAGAGGACGCAGGCGCAGAGCCAGGCAATGTATTGGAAGAAAGAAATGGGGTGGAGGACACACAAGCTGCATCGATTTCGGGTACATCTGTTCGTAGTGCTGTTTTCAAAGAAGATGCTCATGCTGCAGTACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGCGAGAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAGTACACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCGAAATACTTCGGTGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCCGAGCTTCTCAAAGATGGATTTACTGCCGATAAATCTTGCAGCTGCCCCAAACAAAGCCCTACAGCCATTGACACTGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATGCTCCTAGCTCTTCAAATGCACCTACTCCACATGGACTTGAATCTCAAGCTAAGTTGGAAACTGATAATGTACCATCTACATCTGGAACGGCTAAAAATTGCTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTCTTAATTTTTGATGATAATCCCTTGTCCAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGCATTGATGAACTGGACAAATTACTGATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCGTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCATACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTCACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTCTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGAGGAGGCGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTAGAAACTCTTAAAATTAAAGGAAATTTGCAGCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTCGAGGCCTTGTCTGTCAAGGATTTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGCTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAAAATGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTAGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCCGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAACAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGACTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAAGATCTGTCTTCTGATGTCGATCTGAGTGCAATAGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACTGCGGCACATCGTCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGATCTTGCTGCGGCTCTAGAAGAAGGTAAACCCGCACCTGCATTACGTGGAAGTGATGACATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCTGAATCCGTTAATATGACGGAGCTTTTACAATGGAATGAACTATACGGGGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3624 0.4368 MVSTRRNSGGGSFPAAKRPSSSSDDKPPSPSPKRQKPDNGAAAASSEKPISISPTENSKDLRTPEPPADPGECAPSDAQIEEPVNTDDKIDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPILESSAPWCRLLSQSAQHPNVSISIPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGGDVAVLESTGSKGSVLVNGTLVKKNTCCALNSGDEVVFGLHGNHSYIFQQVNTEVAVKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSHTASKPHQGADVSIHTVLPDGTEVELDGLEGNSTPNIGTDKAADAEASNKDSPMDYDPEDAGAEPGNVLEERNGVEDTQAASISGTSVRSAVFKEDAHAAVLDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGFTADKSCSCPKQSPTAIDTAKSMDPPASETDAPSSSNAPTPHGLESQAKLETDNVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQEEALLASWKQQLDRDVETLKIKGNLQHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAALEEGKPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01899 1207 Pfam FHA domain 153 222 IPR000253 GO:0005515
Vifa2g01899 1207 SMART AAA_5 939 1076 IPR003593 GO:0016887
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 282 301 - -
Vifa2g01899 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1182 IPR027417 -
Vifa2g01899 1207 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 381 1206 - -
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 46 60 - -
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 1 105 - -
Vifa2g01899 1207 Gene3D - 131 240 - -
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 312 355 - -
Vifa2g01899 1207 CDD FHA 134 232 - -
Vifa2g01899 1207 Gene3D - 1075 1169 - -
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 497 535 - -
Vifa2g01899 1207 Coils Coil 863 883 - -
Vifa2g01899 1207 Pfam AAA+ lid domain 1096 1132 IPR041569 -
Vifa2g01899 1207 SUPERFAMILY SMAD/FHA domain 115 232 IPR008984 GO:0005515
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 1 28 - -
Vifa2g01899 1207 ProSitePatterns AAA-protein family signature. 1046 1065 IPR003960 GO:0005524|GO:0016887
Vifa2g01899 1207 MobiDBLite consensus disorder prediction 519 534 - -
Vifa2g01899 1207 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 901 1077 - -
Vifa2g01899 1207 Gene3D - 901 1182 IPR027417 -
Vifa2g01899 1207 Pfam ATPase family associated with various cellular activities (AAA) 943 1072 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01899 Vifa-Chr2 494164128 494177463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01899 902 1150 Calmodulin-binding Proteins AT3G56690 40.625 1.09e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01899 - - tpra:123897002 2134.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01898 2 494164128 494177463 Vifa2g01899 2 494164128 494177463 PCT