Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01898 ATGGTTTCAACGAGACGCAACAGTGGTGGCGGATCTTTCCCCGCCGCTAAAAGACCTTCTTCATCTTCCGATGACAAACCGCCTTCTCCTTCACCTAAGCGCCAGAAGCCTGACAATGGTGCTGCTGCTGCTTCCTCGGAGAAACCGATATCGATATCTCCGACGGAGAATTCCAAGGATTTGCGTACTCCTGAGCCTCCCGCCGATCCAGGAGAATGTGCTCCCTCCGATGCTCAGATCGAAGAACCGGTAAATACCGATGATAAAATCGATGCAACACCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCTGATAAACCTAGGGCTTCGTTCTCTTCTTGGAGTATATATCAGAAACAAAATCCGATTCTCGAGTCTTCAGCTCCCTGGTGTCGGCTTCTGTCCCAGTCTGCTCAGCATCCAAATGTTTCCATTTCCATACCAAACTTCACTATTGGCTCAAGTAGAAATTGCAACTTTCATTTGAAGGATCATACAATAAGTGGGAATTTATGTAAAATCAAACACACACAGCGCGAGGGAGGTGATGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAACACCTGCTGTGCGCTTAACTCGGGTGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAGGTTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGCGTTGGTAAATTTATGCAGCTTGAAAGGAGAAGCGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCACACTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGTACAGAAGTTGAGCTTGATGGCCTGGAAGGCAACTCAACTCCAAATATAGGAACTGATAAAGCTGCTGATGCCGAGGCTAGCAACAAGGACTCTCCTATGGATTACGATCCAGAGGACGCAGGCGCAGAGCCAGGCAATGTAAAGTTCTCTGGGGTATTGGAAGAAAGAAATGGGGTGGAGGACACACAAGCTGCATCGATTTCGGGTACATCTGTTCGTAGTGCTGTTTTCAAAGAAGATGCTCATGCTGCAGTACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGCGAGAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAGTACACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCGAAATACTTCGGTGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCCGAGCTTCTCAAAGATGGATTTACTGCCGATAAATCTTGCAGCTGCCCCAAACAAAGCCCTACAGCCATTGACACTGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATGCTCCTAGCTCTTCAAATGCACCTACTCCACATGGACTTGAATCTCAAGCTAAGTTGGAAACTGATAATGTACCATCTACATCTGGAACGGCTAAAAATTGCTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTCTTAATTTTTGATGATAATCCCTTGTCCAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGCATTGATGAACTGGACAAATTACTGATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCGTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCATACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTCACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTCTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGAGGAGGCGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTAGAAACTCTTAAAATTAAAGGAAATTTGCAGCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTCGAGGCCTTGTCTGTCAAGGATTTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGCTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAAAATGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTAGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCCGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAACAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGACTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAAGATCTGTCTTCTGATGTCGATCTGAGTGCAATAGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACTGCGGCACATCGTCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGATCTTGCTGCGGCTCTAGAAGAAGGTAAACCCGCACCTGCATTACGTGGAAGTGATGACATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCTGAATCCGTTAATATGACGGAGCTTTTACAATGGAATGAACTATACGGGGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3639 0.4369 MVSTRRNSGGGSFPAAKRPSSSSDDKPPSPSPKRQKPDNGAAAASSEKPISISPTENSKDLRTPEPPADPGECAPSDAQIEEPVNTDDKIDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPILESSAPWCRLLSQSAQHPNVSISIPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGGDVAVLESTGSKGSVLVNGTLVKKNTCCALNSGDEVVFGLHGNHSYIFQQVNTEVAVKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSHTASKPHQGADVSIHTVLPDGTEVELDGLEGNSTPNIGTDKAADAEASNKDSPMDYDPEDAGAEPGNVKFSGVLEERNGVEDTQAASISGTSVRSAVFKEDAHAAVLDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGFTADKSCSCPKQSPTAIDTAKSMDPPASETDAPSSSNAPTPHGLESQAKLETDNVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQEEALLASWKQQLDRDVETLKIKGNLQHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAALEEGKPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01898 1212 Gene3D - 906 1187 IPR027417 -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 282 301 - -
Vifa2g01898 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 907 1187 IPR027417 -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 502 540 - -
Vifa2g01898 1212 SMART AAA_5 944 1081 IPR003593 GO:0016887
Vifa2g01898 1212 Pfam FHA domain 153 222 IPR000253 GO:0005515
Vifa2g01898 1212 Coils Coil 868 888 - -
Vifa2g01898 1212 Pfam AAA+ lid domain 1101 1137 IPR041569 -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 1 105 - -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 46 60 - -
Vifa2g01898 1212 Gene3D - 131 240 - -
Vifa2g01898 1212 ProSitePatterns AAA-protein family signature. 1051 1070 IPR003960 GO:0005524|GO:0016887
Vifa2g01898 1212 CDD FHA 134 232 - -
Vifa2g01898 1212 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 386 1211 - -
Vifa2g01898 1212 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 906 1082 - -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 524 539 - -
Vifa2g01898 1212 Pfam ATPase family associated with various cellular activities (AAA) 948 1077 IPR003959 GO:0005524|GO:0016887
Vifa2g01898 1212 Gene3D - 1080 1174 - -
Vifa2g01898 1212 SUPERFAMILY SMAD/FHA domain 115 232 IPR008984 GO:0005515
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 1 28 - -
Vifa2g01898 1212 MobiDBLite consensus disorder prediction 312 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01898 Vifa-Chr2 494164128 494177463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01898 907 1155 Calmodulin-binding Proteins AT3G56690 40.625 1.07e-42 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01898 - - tpra:123897002 2145.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01898 2 494164128 494177463 Vifa2g01899 2 494164128 494177463 PCT