Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01877 ATGGACGGAGCCAGCGGCGTCAGTAGCGGCGGAGAAGTCTCATCCCAATTACCGGCACCGACACCGATGCAAAACTCAAACTCGCCGCCTCCGTTTTTGAGCAAGACGTATGACATGGTGGATGACCCTTCCACTGACGTCGTAGTTTCATGGAGCGCAACCAATAACAGTTTTGTTGTTTGGGACCTACCGGAATTCGCTAGGGACCTTTTGCCGAAGTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGACAGTTAAATACATATAGTGGATTTCAATATACTAATGCTTTTGTTGGTTTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAGAGAAAGTAAAAGTTATCAATTTTGGACTCGAGCAAATGCAAATGGATACTTCAAAATAACTAATATTGTGCCAGGAAACTATAGTTTGTATGGTTGGGTCCCTGGATTCATTGGTGATTATAAATCTAATTCTACAATCACCATCACCCCTGGAGGAGTCATAAACTTGAATTCACTTGTATACAATCCTCCAAGAAATGGACCAACCATTTGGGAAATCGGATTCCCAGATCGATTGGCTTTAGAATTTCACGTTCCAGACCCTTACCCTACTCTTTTGAACAAATTATACTCCAAACAACGCAGAGACAAGTTTAGACAATATGGATTATGGGAACGTTACAGTGATATATATTCAAATGGTGATCTTGTTTACACTGTGGGTATTGACAAGAATATAGATTGGTTTTATGCTCAAGTTACAAGAATAACAGAAAACAAAACATATGAACCAACGACATGGCTGATTATATTTGAACATCAAAATGACATAATCATTGGAAACTATACATTACAACTAGCCTTAGCTAGTGCTGCTGATGCAAACTTAGAGGTTCGTTTCAATGACGCTAGCGTAGAACCACCTCACTTTGCGACAGGGCGGTTTGGAGGAGACAATGCCATAGCAAGACATGGAATTCATGGATTGTATTGGTTGTTTAGAATTGATGTTCCAAGTTATCTTCTTGTGAAAGGACAAAATATCATCTATTTGAAGCAGTCAAGAGCGATTAATCCTTTTCAAGGAGTTATGTATGATTATATTCGGTTAGAACGACCTTCGATAACTTGA 1131 0.3979 MDGASGVSSGGEVSSQLPAPTPMQNSNSPPPFLSKTYDMVDDPSTDVVVSWSATNNSFVVWDLPEFARDLLPKYFKHNNFSSFVRQLNTYSGFQYTNAFVGLALPGEAGSWQRESKSYQFWTRANANGYFKITNIVPGNYSLYGWVPGFIGDYKSNSTITITPGGVINLNSLVYNPPRNGPTIWEIGFPDRLALEFHVPDPYPTLLNKLYSKQRRDKFRQYGLWERYSDIYSNGDLVYTVGIDKNIDWFYAQVTRITENKTYEPTTWLIIFEHQNDIIIGNYTLQLALASAADANLEVRFNDASVEPPHFATGRFGGDNAIARHGIHGLYWLFRIDVPSYLLVKGQNIIYLKQSRAINPFQGVMYDYIRLERPSIT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01877 376 FunFam Heat stress transcription factor B-4 24 98 - -
Vifa2g01877 376 Pfam Polysaccharide lyase family 4, domain II 97 168 IPR029413 -
Vifa2g01877 376 SUPERFAMILY Galactose-binding domain-like 179 371 IPR008979 -
Vifa2g01877 376 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 94 374 - -
Vifa2g01877 376 MobiDBLite consensus disorder prediction 8 33 - -
Vifa2g01877 376 Pfam Polysaccharide lyase family 4, domain III 182 370 IPR029411 -
Vifa2g01877 376 Gene3D - 24 134 IPR036388 -
Vifa2g01877 376 SUPERFAMILY "Winged helix" DNA-binding domain 27 97 IPR036390 -
Vifa2g01877 376 Pfam HSF-type DNA-binding 32 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01877 376 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01877 376 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01877 376 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01877 376 MobiDBLite consensus disorder prediction 1 36 - -
Vifa2g01877 376 SUPERFAMILY Starch-binding domain-like 116 171 IPR013784 GO:0030246
Vifa2g01877 376 CDD RGL4_C 184 371 - -
Vifa2g01877 376 Gene3D - 179 371 - -
Vifa2g01877 376 CDD RGL4_M 97 172 IPR029413 -
Vifa2g01877 376 SMART hsfneu3 28 212 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01877 Vifa-Chr2 488924729 488926708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01877 98 374 Polysaccharide Lyase AT1G09890 57.914 3.89e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa2g01877 CBM-like 3e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01877 K18195 - gmx:100776664 446.817