Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g01872 | ATGGCTACTGCTTGTGCTTTGTTCAATGCTGTTGGAGGAGGAAACACTACTACTGATGAAACCAACAACAATAGTACCTCTAACTCGAGTAACATCAGCAGTGAAGATTTTCACAACATACCTCAACGACAACATTCTCCGTCTTCTTTACGAAGGTCCAAGAGTTTCAAGTGTTTTTTTAGCCAGATCCTTGGGTTGCTAGCAACGGTGCTGCTGGTAGTGGTAGCAGATCCATATTCAACAGTAGCAGAACCGCTTCTTTGGATTCATTTGGTTGGTCATTTGGGTGAAGTTTATGAAGAGTGGGTTCATCAGCTCATTGTTGCAAGGGAGGTTGCTGAATTCTTGTTGATGAGAACCAGTGATGATAATGTATCTAAGAAGGAGTTCAATGAAATTGAGTGGTCTGTTGGTCACCATCCTCCCAGTGTTCTCATCCCAATTGCACATGGTTCTGAAGAGATTGAAGTAGTGACACTGATAGATATTCTAAGGCGAGCAAAAGCTAATGTCATAGTTGCTTCTGTTGAGAAAACTCTTGGAGTTATGGCTTCTCAAGGAACCAAAATTGTTGCTGATAAGTTACTTAGTGATGTTCAAGAGCTAAGCAAATCTAGAATTCTGAAGAAGCTTCTAAAAGAACAAAATTCAGCTGGAAGAATATACGGGGCCGTCTGCTCCTCACCTGCTATTCTACACAAACATGGTTTACTAAAGTTGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGCGCTAAATGCAATCATCTCACAGTTACCAAAACGTAGGCAGACTATGCTTTTCTCAGCAACTCAAACGAAGTCAGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTACACGAAGAGTCTGTGGCTGCCACTCCTTCTCTCTTGAAGCAAATTGTGATGATTGTTCCTCTGGATCAAAAGTTAGATATGCTGTGGACTTTCATAAAGACTCATCTACAGTTCAAAACAATTGTCTTTCTATCAAGTTGTAAACAGGTAAATTATGTCTACGAGGCATTTAGAAAACTGCACCACTGA | 1089 | 0.4096 | MATACALFNAVGGGNTTTDETNNNSTSNSSNISSEDFHNIPQRQHSPSSLRRSKSFKCFFSQILGLLATVLLVVVADPYSTVAEPLLWIHLVGHLGEVYEEWVHQLIVAREVAEFLLMRTSDDNVSKKEFNEIEWSVGHHPPSVLIPIAHGSEEIEVVTLIDILRRAKANVIVASVEKTLGVMASQGTKIVADKLLSDVQELSKSRILKKLLKEQNSAGRIYGAVCSSPAILHKHGLLKLQVLVLDEADRILDSGFKRALNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVAATPSLLKQIVMIVPLDQKLDMLWTFIKTHLQFKTIVFLSSCKQVNYVYEAFRKLHH | 362 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g01872 | 362 | Gene3D | - | 307 | 362 | IPR027417 | - | |
Vifa2g01872 | 362 | Gene3D | - | 218 | 302 | IPR027417 | - | |
Vifa2g01872 | 362 | PANTHER | RNA HELICASE | 237 | 357 | - | - | |
Vifa2g01872 | 362 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 244 | 252 | IPR000629 | - | |
Vifa2g01872 | 362 | Gene3D | - | 142 | 202 | IPR029062 | - | |
Vifa2g01872 | 362 | SMART | ultradead3 | 97 | 315 | IPR014001 | - | |
Vifa2g01872 | 362 | Pfam | DJ-1/PfpI family | 143 | 200 | IPR002818 | - | |
Vifa2g01872 | 362 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 240 | 357 | IPR027417 | - | |
Vifa2g01872 | 362 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 188 | 298 | IPR014001 | - | |
Vifa2g01872 | 362 | SUPERFAMILY | Class I glutamine amidotransferase-like | 136 | 239 | IPR029062 | - | |
Vifa2g01872 | 362 | MobiDBLite | consensus disorder prediction | 16 | 48 | - | - | |
Vifa2g01872 | 362 | Pfam | DEAD/DEAH box helicase | 235 | 287 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g01872 | Vifa-Chr2 | 487737490 | 487738629 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g01872 | 240 | 362 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 26.613 | 6.26e-07 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g01872 | K14776 | - | gmx:100820055 | 215.312 |