Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01872 ATGGCTACTGCTTGTGCTTTGTTCAATGCTGTTGGAGGAGGAAACACTACTACTGATGAAACCAACAACAATAGTACCTCTAACTCGAGTAACATCAGCAGTGAAGATTTTCACAACATACCTCAACGACAACATTCTCCGTCTTCTTTACGAAGGTCCAAGAGTTTCAAGTGTTTTTTTAGCCAGATCCTTGGGTTGCTAGCAACGGTGCTGCTGGTAGTGGTAGCAGATCCATATTCAACAGTAGCAGAACCGCTTCTTTGGATTCATTTGGTTGGTCATTTGGGTGAAGTTTATGAAGAGTGGGTTCATCAGCTCATTGTTGCAAGGGAGGTTGCTGAATTCTTGTTGATGAGAACCAGTGATGATAATGTATCTAAGAAGGAGTTCAATGAAATTGAGTGGTCTGTTGGTCACCATCCTCCCAGTGTTCTCATCCCAATTGCACATGGTTCTGAAGAGATTGAAGTAGTGACACTGATAGATATTCTAAGGCGAGCAAAAGCTAATGTCATAGTTGCTTCTGTTGAGAAAACTCTTGGAGTTATGGCTTCTCAAGGAACCAAAATTGTTGCTGATAAGTTACTTAGTGATGTTCAAGAGCTAAGCAAATCTAGAATTCTGAAGAAGCTTCTAAAAGAACAAAATTCAGCTGGAAGAATATACGGGGCCGTCTGCTCCTCACCTGCTATTCTACACAAACATGGTTTACTAAAGTTGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGCGCTAAATGCAATCATCTCACAGTTACCAAAACGTAGGCAGACTATGCTTTTCTCAGCAACTCAAACGAAGTCAGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTACACGAAGAGTCTGTGGCTGCCACTCCTTCTCTCTTGAAGCAAATTGTGATGATTGTTCCTCTGGATCAAAAGTTAGATATGCTGTGGACTTTCATAAAGACTCATCTACAGTTCAAAACAATTGTCTTTCTATCAAGTTGTAAACAGGTAAATTATGTCTACGAGGCATTTAGAAAACTGCACCACTGA 1089 0.4096 MATACALFNAVGGGNTTTDETNNNSTSNSSNISSEDFHNIPQRQHSPSSLRRSKSFKCFFSQILGLLATVLLVVVADPYSTVAEPLLWIHLVGHLGEVYEEWVHQLIVAREVAEFLLMRTSDDNVSKKEFNEIEWSVGHHPPSVLIPIAHGSEEIEVVTLIDILRRAKANVIVASVEKTLGVMASQGTKIVADKLLSDVQELSKSRILKKLLKEQNSAGRIYGAVCSSPAILHKHGLLKLQVLVLDEADRILDSGFKRALNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVAATPSLLKQIVMIVPLDQKLDMLWTFIKTHLQFKTIVFLSSCKQVNYVYEAFRKLHH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01872 362 Gene3D - 307 362 IPR027417 -
Vifa2g01872 362 Gene3D - 218 302 IPR027417 -
Vifa2g01872 362 PANTHER RNA HELICASE 237 357 - -
Vifa2g01872 362 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 244 252 IPR000629 -
Vifa2g01872 362 Gene3D - 142 202 IPR029062 -
Vifa2g01872 362 SMART ultradead3 97 315 IPR014001 -
Vifa2g01872 362 Pfam DJ-1/PfpI family 143 200 IPR002818 -
Vifa2g01872 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 357 IPR027417 -
Vifa2g01872 362 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 298 IPR014001 -
Vifa2g01872 362 SUPERFAMILY Class I glutamine amidotransferase-like 136 239 IPR029062 -
Vifa2g01872 362 MobiDBLite consensus disorder prediction 16 48 - -
Vifa2g01872 362 Pfam DEAD/DEAH box helicase 235 287 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01872 Vifa-Chr2 487737490 487738629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01872 240 362 Eukaryotic Initiation Factors Gene Family AT1G72730 26.613 6.26e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01872 K14776 - gmx:100820055 215.312