Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01868 ATGCAAGCTCCTTTCGTCAAACATCCGGCGAAACTGCACAGATCTGTCTCCTTCAACTACGTAGCTCCCCGGATCGCAGCACTGCCAACAACACTTTCTGCAACGATATTTTTTGCTTTTGATTTCATAATGGAAGAAGAAAAAGAGAGAATCCCAAGAAATCACAGCCATGGCGCGAAGAAGCGTAAGAAGAAGACCTATACCAAGCCGAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTGCAGTTTTACAAGGTGGATGATTCCGGAAAGGTGCAGAGGCTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCCGGGACTTTCGTGGTGAATCATTTCGATCGTCATTATTGTGGTAAGTGCGGGCTTACCTATGTTTACCAGAAGGCTGAAGCATGA 414 0.4686 MQAPFVKHPAKLHRSVSFNYVAPRIAALPTTLSATIFFAFDFIMEEEKERIPRNHSHGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFVVNHFDRHYCGKCGLTYVYQKAEA 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01868 137 Gene3D - 61 137 IPR038582 -
Vifa2g01868 137 SMART Ribosomal_S27_2 84 129 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vifa2g01868 137 MobiDBLite consensus disorder prediction 55 76 - -
Vifa2g01868 137 Pfam Ribosomal protein S27a 84 129 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vifa2g01868 137 SUPERFAMILY Zn-binding ribosomal proteins 82 135 IPR011332 GO:0006412
Vifa2g01868 137 MobiDBLite consensus disorder prediction 51 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01868 Vifa-Chr2 486453458 486453940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01868 75 136 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 75.806 2.35e-32 110