Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01862 ATGAACGAGGAATGCAGAGGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTTTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGAATTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGCTGAAATGGGTAATGCGGAGAAGTCCAGAATAATTATGGTCGGTGATACTTTGAAGAAAGCTGGTGATTCATCTCAGAATAGTCTTGTTAAAGACGTTGGAGATACACACTTGGTTCTTGAGAGGCCAGCATCTACATTTCCCATTCAACTACTGCATAGTAAGACAAACGATCTTGAAATAATAAATTGTATGTTGTGTTGTATAGTACAGTATATCAATAAGTCTTTCAATAAATCGTGGTTGGTGCTTCATGTTGCGTTTCTTGTTCTAATTTGTGTTACCCTCTTCTTTCTTCTTAGCTGGTTTCTTGCAGAAACTGGTTTAGTCTCTGTTGAACATCAAATGCGAGAGATGGGCTTGGACGTTAAGGCTCCTGTAGAGACTGACAAAAAGGCCGAATAA 843 0.4247 MNEECRGSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPFHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGNLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFAEMGNAEKSRIIMVGDTLKKAGDSSQNSLVKDVGDTHLVLERPASTFPIQLLHSKTNDLEIINCMLCCIVQYINKSFNKSWLVLHVAFLVLICVTLFFLLSWFLAETGLVSVEHQMREMGLDVKAPVETDKKAE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01862 280 ProSiteProfiles Protein kinase domain profile. 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01862 280 SMART serkin_6 4 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01862 280 Gene3D Transferase(Phosphotransferase) domain 1 77 150 - -
Vifa2g01862 280 SUPERFAMILY Protein kinase-like (PK-like) 77 151 IPR011009 -
Vifa2g01862 280 Pfam Protein kinase domain 77 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01862 280 PANTHER CELL DIVISION PROTEIN KINASE 77 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01862 Vifa-Chr2 484425146 484429389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01862 77 149 Core Cell Cycle Gene Families AT2G38620 89.041 2.92e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa2g01862 Pkinase 6.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01862 K07760 - rcu:8283032 132.109