Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01861 ATGACTAAACAAAATAATGTAGTGGTCACACCTGAAGTTAAGTCATGTATTAACACGCTTATCTCCACCGTGGTTTTGCCTAGTGCCGCAACCGCGCCGGAATCTATGGCGGTGATTGGTGGTTTTTTGGGTTTCTCTAGTAATCATTTTATCAAGAGATTGGAAGGTAGTAATGTTAATGGTTGGATTGATTCAATGAGAGCTGCTTCTCCAACTCGTGTCAAATCTTCGGACAATTATCAAGAAAAATGTTCATGGATTCTTTATCATCCTTCAGCGCTAAAATTATTTGATCAAATATTGTTTAGTTCTAAAGGAAAACAGATTGTGTTTTTTCTAGACTACGATGGAACTCTTTCTCCTATTGTTGCTGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGGAACACTTAGGGATGTAGCAAAACATTTCCCTACAGCAATTGTGACCGGAAGGTGCAGAGACAAGGTATTTAACTTCGTAAAATTAGCAGAGTTGTACTATGCAGCAAGCCATGGTATGGACATCATGGGACCAACAAAAAACCAAAGTGCTGAAAAATGTATATGTGATAGTAACAAACCAGTTTTGTTTCAACCTGCAAGTCAATTTCTACCGATGATCGATGAGGTGTATAAAATTTTGTTAAAAAAAACAAAATCTGTCCCTGGAGCTATGGTAGAGAACAACAAATATTGCTTATCCGTGCACTTCCGTTGTGTCGACGAAAAGAGTTGGGCTCCTTTGGCTGAGAAAGTAAGATTGGTACTGAATGAGTATCCAAAACTTAGGCTAACACAAGGAAGAAAAGTGTTGGAGATTCGTCCCACTATCAAATGGGACAAAGGAAAAGCTCTTGAGTTTTTGTTGGAATCTTTAGGATATGAGAATTCTAATGATGTGTTCCCAATCTACATTGGTGATGATCGAACCGATGAGGATGCTTTTAAGGTTTTGAGAAGAAGGGGTCAAGGGGTTGGGATTCTTGTTTCTAGTGTTCCAAAAGAAACAGATGCTTCCTACACACTGCAAGATCCATCAGAGGTTGAGAATTTTTTGCGGCGATTGGTGGAATGGAAAAGATTGAACCCCACAAGTGCATAG 1110 0.3901 MTKQNNVVVTPEVKSCINTLISTVVLPSAATAPESMAVIGGFLGFSSNHFIKRLEGSNVNGWIDSMRAASPTRVKSSDNYQEKCSWILYHPSALKLFDQILFSSKGKQIVFFLDYDGTLSPIVADPDKAFMTRKMRGTLRDVAKHFPTAIVTGRCRDKVFNFVKLAELYYAASHGMDIMGPTKNQSAEKCICDSNKPVLFQPASQFLPMIDEVYKILLKKTKSVPGAMVENNKYCLSVHFRCVDEKSWAPLAEKVRLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRRRGQGVGILVSSVPKETDASYTLQDPSEVENFLRRLVEWKRLNPTSA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01861 369 FunFam Trehalose 6-phosphate phosphatase 209 368 - -
Vifa2g01861 369 FunFam Trehalose 6-phosphate phosphatase 203 279 - -
Vifa2g01861 369 Gene3D - 211 367 IPR023214 -
Vifa2g01861 369 Gene3D - 109 196 IPR023214 -
Vifa2g01861 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 49 366 IPR044651 GO:0004805|GO:0005992
Vifa2g01861 369 CDD HAD_TPP 110 353 - -
Vifa2g01861 369 NCBIfam HAD-IIB family hydrolase 111 324 IPR006379 -
Vifa2g01861 369 NCBIfam trehalose-phosphatase 107 359 IPR003337 GO:0003824|GO:0005992
Vifa2g01861 369 Pfam Trehalose-phosphatase 112 349 IPR003337 GO:0003824|GO:0005992
Vifa2g01861 369 SUPERFAMILY HAD-like 110 362 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01861 Vifa-Chr2 484228836 484230841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01861 91 355 Trehalose Biosynthesis Gene Families AT1G23870 24.549 7.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01861 K01087 - gmx:100788641 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01861 2 484228836 484230841 Vifa2g01861 2 484228836 484230841 ECH
Vifa1g00441 1 69554706 69556972 Vifa2g01861 2 484228836 484230841 PCT