Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01855 ATGGAAGCTATGATGGATTTATACAATAACACACAACTTCACTTGGATCCATACTCAGATCTATTCAGAGGTGAATTGATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCCCCAATATCTACACCATCACCTTCTTCTTCTTCTTCTTCTTTCTACAATGATGGTTGTTCAACATGGATGACCCACGGGTTATCGAATAGCCCGAGTTTCTTAGGTTTTGTTCAACAACCAGCTTCTACTTCTTCTTCTATTCTTGGTCTTAACCATTTGACCCCATCTCAAATCAACCAGATCCAATCACAAATCCAACTTCAAAATTTTACCTTACAACAACATCAACAACACCAACAACAAGGTCTCAGTAACACTCTTAGCTTCCTCAGTCCAAAGCCGATCCCTATGAAGCACGTGGGTAATACTTCTTCAAAGCCCACGAAGCTATACAGAGGGGTGAGGCAAAGACACTGGGGAAAATGGGTTGCTGAGATTAGACTCCCTAAGAACCGTACCAGGCTTTGGCTTGGTACCTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGACAAAGCTGCTTATAAGCTTCGTGGTGACTTCGCTAGGCTTAATTTCCCAAATCTCAAACACCATGGTTCATGTATTGGCGTTGGTGGTGAGTTTGGTGAGTATAAGCCTCTTCCTTCTTCTGTAGACGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCCGAGATGCAGAAACAGGGAAAGCCAGAGAAGCCTAAGAAAACACCAGCTGCTCGGTCCAAGGCTGCATCCAAGGTGGTACCTCCACCGGAGACCACGGTGGAGATAGAGAACTCTGTTGAAAACTCTGTTGATGATTTGAAGGGTCCAGGTTCAAAGGGGTTTTGTAAGGTTGAAATTTCGATTTCTCCGGCTATGACTGAGAGTGAAAGCTCTGAAGGTTTTTCACCGCTTTCTGATCTTACTTTTGGCGATGTTGGCGAACCACAGTGGGAAGGTGGTTCAGAAAATTTTAATCTTCTCAAATACCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1065 0.431 MEAMMDLYNNTQLHLDPYSDLFRGELMEVLEPFIKSPSPISTPSPSSSSSSFYNDGCSTWMTHGLSNSPSFLGFVQQPASTSSSILGLNHLTPSQINQIQSQIQLQNFTLQQHQQHQQQGLSNTLSFLSPKPIPMKHVGNTSSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHHGSCIGVGGEFGEYKPLPSSVDAKLQAICEGLAEMQKQGKPEKPKKTPAARSKAASKVVPPPETTVEIENSVENSVDDLKGPGSKGFCKVEISISPAMTESESSEGFSPLSDLTFGDVGEPQWEGGSENFNLLKYPSYEIDWDSL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01855 354 Gene3D AP2/ERF domain 148 206 IPR036955 GO:0003700|GO:0006355
Vifa2g01855 354 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 MobiDBLite consensus disorder prediction 308 335 - -
Vifa2g01855 354 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 CDD AP2 147 207 IPR001471 GO:0003700|GO:0006355
Vifa2g01855 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 354 - -
Vifa2g01855 354 SUPERFAMILY DNA-binding domain 148 205 IPR016177 GO:0003677
Vifa2g01855 354 MobiDBLite consensus disorder prediction 243 273 - -
Vifa2g01855 354 FunFam Ethylene-responsive transcription factor 2 147 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01855 Vifa-Chr2 482501500 482502564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01855 1 354 AP2-EREBP Transcription Factor Family AT1G78080 49.867 2.48e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g01855 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01855 K09286 - gmx:732559 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01855 2 482501500 482502564 Vifa2g01855 2 482501500 482502564 ECH
Vifa1g00424 1 67057244 67058266 Vifa2g01855 2 482501500 482502564 PCT