Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01838 ATGGATTCTCCAACTCATAAAGATACAGAAAGAAACCAGATATCGCCTTTAGATGATGAAGCACAAACACCAAATGCATACAAAGTTGCAATTCCTCCAAAACAGAACTTGTTCAAGGAATTCCAATATACTGTTAAAGAAACATTCTTTGCTGATGATCCTCTGAGATCCTTCAAAGACCAAACTAAATCAAGAAAGCTAGTTCTTTGTATTGAGGCCATATTCCCAATTATTAACTGGGGGAGAGGCTATAATCTTAAGAAGTTTAGGGGAGATATAATTGCTGGTCTCACTATTGCAAGTCTTTGCATACCTCAGGATATTGGATACTCGAAGCTTGCGCATTTGGATCCGCAGTATGGACTGTACTCGAGCTTTGTTCCGCCGCTGATTTATGCCTTCATGGGGAGCTCTCGCGATATAGCAATAGGACCGGTGGCAGTGGTTTCTCTCTTGATGGGGACTTTGCTTAGTAATGAGATTGATCCCGTTACTCATAAAGCAGAATATCAAAGACTTGCTTTTACAGCCACGTTTTTCGCTGGGATTACACAAGCAACTCTTGGGATTTTCAGGTTAGGATTCTTGATTGACTTCCTATCCCATGCTGCTATTGTTGGTTTTATGGGAGGTGCTGCCATCACAATTGGCCTTCAACAGCTAAAGGGTTTCCTTGGCATTAAAAGCAAAATGTTCACAACAAAAACTGATATTGTCTCCGTGCTGCATTCAGTGTTCGCATCAGCCAAACATGGATGGAACTGGCACACTATATTAATCGGAGCTAGCTTTTTGTGTTTTCTTCTGCTCGCCAAGTTTATCGGAAAGAAGAACAACAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTCGTGTTGTCCACTTTTTTCGTATTCATAACGCGCGCAGATAAGCAAGGGGTAGAAATTGTAAATCATATAGAGAAAGGGATCAATCCTTCATCTGTTCATGATATTTATTTTAGCGGCGAATACCTTGGGAAGGGTTTTAAAATTGGTGTCACCGCAGGCATGATCGCACTGACTGAAGCCGTAGCTATTGGAAGAACTTTTGCATCTATGAAAGACTATCAACTCGATGGAAACAGAGAAATGGTTGCATTAGGAACAATGAATGTTGTTGGTTCGATGACTTCATGTTATGTGGCAACCGGTTCTTTCTCTCGTTCTGCGGTAAATTACATGGCTGGCTGCCAAACTGCGGTATCTAATATTGTGATGTCCGTGGTTGTTTTTTTAACGCTGCAATTCCTTACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTTGCTGCCATCATCATTTCTGCTGTCATCAGCCTTATTGACTATCAGGCAGCAATTTTGATTTGGAAAATCGATAAATTCGATTTCATTGCTTGCATGGGAGCATTCTTTGGGGTTGTTTTCGTCTCGGTTGAGATAGGACTTCTAATCGCTGTTTCTATATCTTTTGCGAAAATCCTATTACAAGTAACAAGGCCAAGAACAGCTATTTTGGGGAAGATTCCTCGGACAACTGTCTATAGAAACATACAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTAATGATTGTAAGAATTGATTCGGCAATATATTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGTTAACGGATGAAGAAACAGTGAAAGGAGACTACCACACAAGAATTCAGTTTTTGATAGTTGAAATGTCACCTGTTACTGATATTGATACAAGTGGCATCCAAGCCTTTGAAGAGTTACATAGAAGTCTTGGAAAAAAAAGTGTTCAACTTGTTCTGGCAAATCCTGGTTCAGCAGTGACAGACAAACTTTACACATCAAATTTTGCTAACATAATTGGACAGGACAAGATTTTCCTCACTGTTGCAGAGGCTGTTACATATTGTTCTCCAAAGCTGGATGTAAACCCATGA 1962 0.3996 MDSPTHKDTERNQISPLDDEAQTPNAYKVAIPPKQNLFKEFQYTVKETFFADDPLRSFKDQTKSRKLVLCIEAIFPIINWGRGYNLKKFRGDIIAGLTIASLCIPQDIGYSKLAHLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLMGTLLSNEIDPVTHKAEYQRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAIVGFMGGAAITIGLQQLKGFLGIKSKMFTTKTDIVSVLHSVFASAKHGWNWHTILIGASFLCFLLLAKFIGKKNNKFFWVPAIAPLISVVLSTFFVFITRADKQGVEIVNHIEKGINPSSVHDIYFSGEYLGKGFKIGVTAGMIALTEAVAIGRTFASMKDYQLDGNREMVALGTMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVFLTLQFLTPLFKYTPNAILAAIIISAVISLIDYQAAILIWKIDKFDFIACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVMIVRIDSAIYFSNSNYVKERILRWLTDEETVKGDYHTRIQFLIVEMSPVTDIDTSGIQAFEELHRSLGKKSVQLVLANPGSAVTDKLYTSNFANIIGQDKIFLTVAEAVTYCSPKLDVNP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01838 653 Pfam STAS domain 524 641 IPR002645 -
Vifa2g01838 653 NCBIfam sulfate permease 76 641 IPR001902 GO:0016020|GO:0055085
Vifa2g01838 653 Pfam Sulfate permease family 89 471 IPR011547 GO:0016020
Vifa2g01838 653 FunFam Sulfate transporter 31 503 648 - -
Vifa2g01838 653 Gene3D STAS domain 503 648 IPR036513 -
Vifa2g01838 653 ProSiteProfiles STAS domain profile. 523 645 IPR002645 -
Vifa2g01838 653 CDD STAS_SulP_like_sulfate_transporter 524 638 - -
Vifa2g01838 653 PANTHER SULFATE TRANSPORTER 35 646 IPR001902 GO:0016020|GO:0055085
Vifa2g01838 653 SUPERFAMILY SpoIIaa-like 525 646 IPR036513 -
Vifa2g01838 653 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01838 Vifa-Chr2 477148394 477152059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01838 1 649 Inorganic Solute Cotransporters AT1G22150 74.924 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01838 K17470 - gmx:100804208 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01838 2 477148394 477152059 Vifa2g01838 2 477148394 477152059 ECH
Vifa1g00395 1 62963359 62967041 Vifa2g01838 2 477148394 477152059 PCT