Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01837 ATGAATTCATTACCCTCAGATGCTTTCAACATGAGACTCACAGAAGATGAACATCATCTTCACCTTGAAGATACTCATCAAATAGAGAGATCACAGTGGATGCTAAACACTCCAAATCCACCTCCTCTATGGAAAAAACTAATCACTCCACTCAAGAATAACAACCTCTTCTTTTCTTCATCCAAAAAGAGAACTTGCCATGAAAATGCTTTTTCCTTCTTTAGTAGTTTGTTCCCAATCCTTAACTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCAGGTTTGACTCTAGCTAGTCTTAGCATACCTCAGAGTATAGGATATGCTAATTTAGCAAAACTTGACCCTCAATATGGATTATATACAAGTGTTGTTCCTCCTCTTATTTATGCTGTGATGGGAAGTTCAAGAGAAATTGCAATAGGACCTGTAGCTGTAGTTTCACTGCTACTATCTTCTTTATGTCACAAAGTGGTTGATCCAGATTTAAATCATGATGCTTATAGGAATTTTGTCTTCACTGTAACATTTTTTTCTGGAATCTTTCAAGTTGCATTTGGAGTTTTCAGGTTGGGATTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTAGGATTCATGGCTGGTGCAGCCATCATGATTGGTCTTCAACAGCTTAAGGGATTGCTTGGGATTAGCAACTTTACTAATAAATCTGATGTTGTTTCTGTTTTGGAATCGGTTTATAAATCACTCCGTCACCAAATTCCATCCGGAGAATGGTACCCTCTGAATTTTGTGATTGGATGTTCATTTCTGATTTTCCTATTGTTTGCAAGATTTATGGGCAAAAGAAACAACAAGCTATTTTGGTTACCAGCTATTGCTCCTCTAGTATCAGTTATATTATCAACTTTTATTGTGTATATTTTCAAAGCTGATAAAAATGGGGTTAATATAGTAAAACATGTGAAAAAAGGGCTTAATCCAAGTTCAGTTCATCAATTACAACTCAGTGGTGAACATGTTGGAGAAGCAGCAAAAATTGGATTGATTTCTGCTGTTATTGCTCTCACTGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCAACTTGATGGGAACAAAGAAATGTTGGCAATGGGTTGTGGGAACATTGCAGGATCGTTCACTTCATGCTATGTTGCAACTGGTTCATTTTCAAGAACCGCAGTAAATTTCAGTGCAAGATGTCAATCATCAATATCAAATATTGTGATGGCAGTGACAGTGATTCTGTGTTTAGAGTTATTTACAAGGCTGTTATATTACACACCTATGGCTATACTTGCTTCCATAATTCTGTCTGCACTTCCAGGATTAATTGACATAAGAGAAGCTTGTTATATATGGAAGGTTGACAAAGTTGATTTCCTTGCTTGCATTGGTGCTTTCTTAGGTGTCTTGTTTGTATCGGTTGAAACTGGTCTTACTGTGGCTGTGTCAATTTCATTTGCCAAGATAGTAATACAATCAATTCGACCTGGAATAGAAGTTCTAGGTAGAATTCCAACAACAGAAGCATTTTGTGATGTTAGTCAATATCCCATGGCTACAAGTACTCCAGGCATTTTGGTCATTCGTATAAGCTCTGGCTCACTATGCTTTGCAAATGCCAATGTTGTTAGAGAAAGGATACTCAAGTGGGTCACAGAAGAAGATGGGCTTAAAGAAACTCAAACTACTAAGCGAAGAGTCCAAGCAGTAATATTGGAGATGACCAATTTGATGAATGTTGATACTTCTGGAATTATAGTACTAGAGGAACTGCACAAGAGGTTGCTCTCAAGAGGCATAAAATTTTGTATGGTGAATCCAAGGTGGCTAGTAATTCATAAGCTTAAAGTGGCACACTTTGTGGATAAAATTGGGAAAGAATGGGTTTTTCTTACCGTTGCTGAAGCTGTGGATGCATGCTTATCTTATAAATTCGCTGACCCATGA 1989 0.3705 MNSLPSDAFNMRLTEDEHHLHLEDTHQIERSQWMLNTPNPPPLWKKLITPLKNNNLFFSSSKKRTCHENAFSFFSSLFPILNLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLCHKVVDPDLNHDAYRNFVFTVTFFSGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLRHQIPSGEWYPLNFVIGCSFLIFLLFARFMGKRNNKLFWLPAIAPLVSVILSTFIVYIFKADKNGVNIVKHVKKGLNPSSVHQLQLSGEHVGEAAKIGLISAVIALTEAMAVGRSFASIKGYQLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSISNIVMAVTVILCLELFTRLLYYTPMAILASIILSALPGLIDIREACYIWKVDKVDFLACIGAFLGVLFVSVETGLTVAVSISFAKIVIQSIRPGIEVLGRIPTTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANVVRERILKWVTEEDGLKETQTTKRRVQAVILEMTNLMNVDTSGIIVLEELHKRLLSRGIKFCMVNPRWLVIHKLKVAHFVDKIGKEWVFLTVAEAVDACLSYKFADP 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01837 662 CDD STAS_SulP_like_sulfate_transporter 530 647 - -
Vifa2g01837 662 ProSiteProfiles STAS domain profile. 546 654 IPR002645 -
Vifa2g01837 662 Pfam STAS domain 530 650 IPR002645 -
Vifa2g01837 662 NCBIfam sulfate permease 79 650 IPR001902 GO:0016020|GO:0055085
Vifa2g01837 662 Pfam Sulfate permease family 92 477 IPR011547 GO:0016020
Vifa2g01837 662 PANTHER SULFATE TRANSPORTER 58 654 IPR001902 GO:0016020|GO:0055085
Vifa2g01837 662 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Vifa2g01837 662 FunFam Sulfate transporter 31 509 657 - -
Vifa2g01837 662 Gene3D STAS domain 509 656 IPR036513 -
Vifa2g01837 662 SUPERFAMILY SpoIIaa-like 534 654 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01837 Vifa-Chr2 476493048 476496996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01837 27 658 Inorganic Solute Cotransporters AT5G10180 61.068 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01837 K17469 - gmx:100805269 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01837 2 476493048 476496996 Vifa2g01837 2 476493048 476496996 ECH
Vifa1g00390 1 62447577 62450225 Vifa2g01837 2 476493048 476496996 PCT