Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01835 ATGTCGTCATCATTACAATCGAATAACAACTCAGCTCCATGTGCCGCGTGCAAGATTCAGCGAAGAAAATGCACACAAGATTGCATTTTCAAACCCTACTTTCCTTCCAACAATCCTCAAAAGTTTCTCTACGTACACAAAGTGTTCGGTGCTAGTAACGTAGCAAAGCTACTCAACGAGGTGACCGAGTCGCAACGTGAGGATACTGTGAGTTCTTTGGCTTATGAAGCGGAAGCGCGTTTGAGGGATCCTGTTTATGGCTGTGTTGGGCTTATTTCGTCGCTTCAGGATAAACTCAAAAGCGTTCAGAATGAACTGAATAATGCCAAGAAGGATCTTGCGAGTTATATTGGTCCTCAGGCTTATCTTCCTCCTCCGATGCCGCCGTTGCCTCCGCTGAATATGAATGCTTTTTATACTCAGCAACAGCGTCAAGATGTTTTTGCATATAATGGTGATGATGAAAACTTGTATTCTAACTTTCAAACGCAATCTTTTCATCATCCCTTAATGGTTTCTTCACAACAACAACCCTATAATGGGTTTTGCTCCAACAAGGTTTTCAAGATGGAAAGACAAAACCTTCCATAG 591 0.423 MSSSLQSNNNSAPCAACKIQRRKCTQDCIFKPYFPSNNPQKFLYVHKVFGASNVAKLLNEVTESQREDTVSSLAYEAEARLRDPVYGCVGLISSLQDKLKSVQNELNNAKKDLASYIGPQAYLPPPMPPLPPLNMNAFYTQQQRQDVFAYNGDDENLYSNFQTQSFHHPLMVSSQQQPYNGFCSNKVFKMERQNLP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01835 196 Coils Coil 92 112 - -
Vifa2g01835 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 160 - -
Vifa2g01835 196 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vifa2g01835 196 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01835 Vifa-Chr2 475834260 475834850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01835 9 144 AS2 family AT5G66870 62.069 3.04e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g01835 LOB 8.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01835 - - mtr:25489402 237.269