Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01826 ATGAACAACTTCATGGACGAAGACTATTGTTGTTGCTGCAATAACTTGGTAACCATAATTTGCAATCTCATCATCATATTATTAGGACTTATCGTTTTCCTCTTATGGCTTATCATACAACCTAAGGCTGTCAAATTCACAGTTACTAATGCATCACTTACTCAATTCAGTATCACAAACAACAACACACTTAACTACAATCTCGTTCTTGACATCATGATCCAAAACCCTAACCGAAAACTTGGTATTTATTACGATAACATTGAAACGCTTGTGTTTTATAAAGATTCTAGGTTTGATTTTCAAACCTTAGAAACATTCTTTCAACATCAAAAGGGTATTGATTTTTTTAGTCTAGTTTTTGAAGGTCAACAAGTGATTTTTTTGAGTCGATATCAGATTTCGAAGTTCGAGGAAGAGAAGAAAGATGGAGTTTATGGAATAGATGTGAAGATTTTTCTTAATGTGAGGTTTAAATTAGGTTTGTTTAAGACAGTGAAGGCTAAACCTAAGATTCGATGTAATTTGAAGGTTCCTTTGAGAACAAGTAATGTAACTTTTTTGGGTGATGAATTTCAAGTCACTGATTGTGATTGGGGTTACAAAGGAATATTGTTTCGTTAG 624 0.3285 MNNFMDEDYCCCCNNLVTIICNLIIILLGLIVFLLWLIIQPKAVKFTVTNASLTQFSITNNNTLNYNLVLDIMIQNPNRKLGIYYDNIETLVFYKDSRFDFQTLETFFQHQKGIDFFSLVFEGQQVIFLSRYQISKFEEEKKDGVYGIDVKIFLNVRFKLGLFKTVKAKPKIRCNLKVPLRTSNVTFLGDEFQVTDCDWGYKGILFR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01826 207 PANTHER OS05G0367900 PROTEIN 10 181 IPR044839 GO:0098542
Vifa2g01826 207 Pfam Late embryogenesis abundant protein 72 174 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01826 Vifa-Chr2 473557711 473558334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01826 38 186 SNARE and Associated Proteins AT1G32270 37.086 3.09e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01826 - - aprc:113873272 190.66