Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01825 ATGGACATATATGATGAACCATTCCAGCAAGTTAGCATGTGGGGTGACACCTTTAAAGTTGAAGGTGGTTTGAATTCAATTGCTTCTTCACCAATGTTAATGGTGAACACTACTAGCATGGAGAGCAAGAGTGAATATGTTCCTCATGAGCCAAGAGAGCCTTCTGGAGGTGATCAAGAGACTACAGATAGTAAGGTGCTAAGACGCCTCGTTCAGAATCGAGAGGCTGCTAGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAATTGGAGTTGGAGATTGGAAGAGCGAGAAAGCAGTTGCAGGGTATGTGCACTGGAAATTCATTAGATACAAGTTTTATGGGATCATCTGAAACAATAAATCCAGGAATTGTTGCATTTGAAATTGAATATGGAAATTGGATCGACGAAAGTCATAGGCGTAACAATGAGCTCAGAAGTGTATTTCAAGCTAACGCGTCCGAAGTGCTGCTCAGTCAAGTTGTTCAGAATGTCATGGATCATTATGCAGATCTTTTTCGAATGAAAGCAGACGCTGCGAAGGCTGATGTCCTATATTTAATCTCGGGCGTCTGGAAAGCATCGGCCGAACGCCTTTTCCTATGGATCGGAGGTTCACGCCCGTCACAGCTTCTAAACCTGATTGTGCCACAACTTGAGCTATTAACCGATCAACAAATTGTTGGCATAAAAAAGCTTTGCCTGTGTTCTCAGCAAGCTGAAGATGCTCTTTCGCAAGGACTCGATAAACTCCAGCAGAGTCTTGCGCAAGACATGTCAGTTGATCCATTCAGTGCAGTAAATCATGGAATTCAGATGGCTTTTGCTATAGGAAAATTCGAAGCACTAGAAGGTTTTGTAATCCAGGCAGATCACCTTAGGCAGGAAACTCTGATACGCATGTCGCGAATCCTGTCTACTCGCCAAGCTGCTAGAGGCTTGATTGCTCTCGGGGAATACTTTCATCGTCTTCAAACTCTTTGTTCTGTTTGGACTTCTCGTCCTCGCAACTCGATGATATCGCCTAGGATTAGTCCTTAG 1077 0.4355 MDIYDEPFQQVSMWGDTFKVEGGLNSIASSPMLMVNTTSMESKSEYVPHEPREPSGGDQETTDSKVLRRLVQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQLQGMCTGNSLDTSFMGSSETINPGIVAFEIEYGNWIDESHRRNNELRSVFQANASEVLLSQVVQNVMDHYADLFRMKADAAKADVLYLISGVWKASAERLFLWIGGSRPSQLLNLIVPQLELLTDQQIVGIKKLCLCSQQAEDALSQGLDKLQQSLAQDMSVDPFSAVNHGIQMAFAIGKFEALEGFVIQADHLRQETLIRMSRILSTRQAARGLIALGEYFHRLQTLCSVWTSRPRNSMISPRISP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01825 358 Gene3D - 64 117 - -
Vifa2g01825 358 MobiDBLite consensus disorder prediction 40 63 - -
Vifa2g01825 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Vifa2g01825 358 ProSiteProfiles DOG1 domain profile. 136 346 IPR025422 GO:0006351|GO:0043565
Vifa2g01825 358 SMART brlzneu 61 121 IPR004827 GO:0003700|GO:0006355
Vifa2g01825 358 Coils Coil 84 111 - -
Vifa2g01825 358 SUPERFAMILY Leucine zipper domain 65 101 IPR046347 GO:0003700|GO:0006355
Vifa2g01825 358 MobiDBLite consensus disorder prediction 45 63 - -
Vifa2g01825 358 FunFam BZIP family transcription factor 64 115 - -
Vifa2g01825 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 349 - -
Vifa2g01825 358 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700|GO:0006355
Vifa2g01825 358 Pfam Seed dormancy control 155 228 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01825 Vifa-Chr2 473349376 473351100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01825 1 348 Calmodulin-binding Proteins AT1G22070 51.630 1.21e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g01825 DOG1 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01825 K14431 - gmx:100775332 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01825 2 473349376 473351100 Vifa2g01825 2 473349376 473351100 ECH
Vifa1g00338 1 54171176 54173235 Vifa2g01825 2 473349376 473351100 PCT