Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01824 ATGGACATATATGATGAACCATTCCAGCAAGTTAGCATGTGGGGTGACACCTTTAAAGTTGAAGGTGGTTTGAATTCAATTGCTTCTTCACCAATGTTAATGGTGAACACTACTAGCATGGAGAGCAAGAGTGAATATGTTCCTCATGAGCCAAGAGAGCCTTCTGGAGGTGATCAAGAGACTACAGATAGTAAGGTGCTAAGACGCCTCGTTCAGAATCGAGAGGCTGCTAGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAATTGGAGTTGGAGATTGGAAGAGCGAGAAAGCAGGGTATGTGCACTGGAAATTCATTAGATACAAGTTTTATGGGATCATCTGAAACAATAAATCCAGGAATTGTTGCATTTGAAATTGAATATGGAAATTGGATCGACGAAAGTCATAGGCGTAACAATGAGCTCAGAAGTGTATTTCAAGCTAACGCGTCCGAAGTGCTGCTCAGTCAAGTTGTTCAGAATGTCATGGATCATTATGCAGATCTTTTTCGAATGAAAGCAGACGCTGCGAAGGCTGATGTCCTATATTTAATCTCGGGCGTCTGGAAAGCATCGGCCGAACGCCTTTTCCTATGGATCGGAGGTTCACGCCCGTCACAGCTTCTAAACCTGATTGTGCCACAACTTGAGCTATTAACCGATCAACAAATTGTTGGCATAAAAAAGCTTTGCCTGTGTTCTCAGCAAGCTGAAGATGCTCTTTCGCAAGGACTCGATAAACTCCAGCAGAGTCTTGCGCAAGACATGTCAGTTGATCCATTCAGTGCAGTAAATCATGGAATTCAGATGGCTTTTGCTATAGGAAAATTCGAAGCACTAGAAGGTTTTGTAATCCAGGCAGATCACCTTAGGCAGGAAACTCTGATACGCATGTCGCGAATCCTGTCTACTCGCCAAGCTGCTAGAGGCTTGATTGCTCTCGGGGAATACTTTCATCGTCTTCAAACTCTTTGTTCTGTTTGGACTTCTCGTCCTCGCAACTCGATGATATCGCCTAGGATTAGTCCTTAG 1071 0.4351 MDIYDEPFQQVSMWGDTFKVEGGLNSIASSPMLMVNTTSMESKSEYVPHEPREPSGGDQETTDSKVLRRLVQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQGMCTGNSLDTSFMGSSETINPGIVAFEIEYGNWIDESHRRNNELRSVFQANASEVLLSQVVQNVMDHYADLFRMKADAAKADVLYLISGVWKASAERLFLWIGGSRPSQLLNLIVPQLELLTDQQIVGIKKLCLCSQQAEDALSQGLDKLQQSLAQDMSVDPFSAVNHGIQMAFAIGKFEALEGFVIQADHLRQETLIRMSRILSTRQAARGLIALGEYFHRLQTLCSVWTSRPRNSMISPRISP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01824 356 MobiDBLite consensus disorder prediction 40 63 - -
Vifa2g01824 356 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Vifa2g01824 356 PANTHER TRANSCRIPTION FACTOR TGA9 1 347 - -
Vifa2g01824 356 Coils Coil 84 111 - -
Vifa2g01824 356 SUPERFAMILY Leucine zipper domain 65 97 IPR046347 GO:0003700|GO:0006355
Vifa2g01824 356 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Vifa2g01824 356 SMART brlzneu 61 121 IPR004827 GO:0003700|GO:0006355
Vifa2g01824 356 MobiDBLite consensus disorder prediction 45 63 - -
Vifa2g01824 356 FunFam BZIP family transcription factor 64 113 - -
Vifa2g01824 356 Gene3D - 65 106 - -
Vifa2g01824 356 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Vifa2g01824 356 Pfam bZIP transcription factor 65 93 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01824 Vifa-Chr2 473349376 473351100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01824 1 346 Calmodulin-binding Proteins AT1G22070 51.913 1.25e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g01824 DOG1 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01824 K14431 - gmx:100775332 494.197