Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01818 ATGAACCGTCAAGTGCTACCACCGTTGCCGAAGAATGCTAGCACCGTTGATCCTAAAATCTGGCGAGCGATCGCCGGTGCCGCCGTGCATATCCCCGCCGTGAATTCTAGGGTTTACTACTTTCCTCAAGGACATATGGACCAAGCTTCTTCGCCTCCGAGCAACCTTTCTCCGCAACTTCTCTCCCGGCCTTACATTCTCTGTTCTGTTTCTGCTGTTCATTTTCTCGCCGATCCGAAAACCGACGAGGTTTTTGCGAAACTGTTTCTGCAACCTCTTAATGATTTCGCTGCTATTTTTCCTCGTGTTCCGGCTCCTGAAGCTGATGACGGTGAGAGAATTTTCTCGTTTGCGAAGATTCTTACACCGTCGGATGCTAACAACGGAGGTGGATTCTCTGTTCCGAGGTTTTGCGCTGATTCTATTTTCCCGCCGCTTGACTATAGTATGGACCCTCCGTATCAGTCTCTTGTGATTACCGATGTTCACGGTATGGCTTGGGAGTTTCGTCACATTTACCGTGGTACGCCGAGGCGGCATTTGCTTACCACCGGTTGGAGTAGGTTCGTCAACGGGAAAAAGCTCGTTGCAGGTGATTCCGTTGTTTTCATGAAGAATACTAGAGGTGTAATGTTCATCGGGATCCGCCGTGCTGTCCGTTATGTTCCGGCTCGGAGTGCTAACGATGCTGCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAACAGGGTGGATGATGAAGATGAGGAGAGACAGGTGGAAGAGAAGTGTAGAGAGGAGTTTTCGAGGAACGGGAAAGGGAAGTTGTCTCCGAAATCGGTTGCGGAGGCGGCGGAATTGGCGGCACAGGGGTTGGCGTTTGAAGTTGTGTATTATCCGAAAGCTGGTTGGTCGGATTTTGTGCTGAAAGCTGAAGTTGTGGATGTAGCAATGAGTGTTACATGGATTCCTGGAATGAGAATCAAAATGGCCGTGGAGACTGATGATTCATCCAGGACTACATGGTTTCAGGGTGTAGTGTCTTCTGTCTCTGTTCCTGATCATGGTCCTTGGGGAGGTTCCCCTTGGCGCATGCTTCAGATTACATGGGATGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGATCGAACTTCTTTCTACTACGCCTTCACTTCATACACCTTTTCCCTCAATAAAAAGGCTTAGAGGGCCCCATGGGGTGTTAACTGATGGAGACCCCTTTTCTATCACAGCATTCACTAACTCAACAATGGGACAATTGAATCAATCGTTGTTGAGTTACGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAGTTTTTCCAACTTTCCAGGTGAAAACCCTCGTCTGTGTATGAGTAACTCCTTTGGCAACAACGCAGTGCTGGGGTTGAAATCTTTGTCAACTGAGCTAAATGTTGGCAGTTCTCAATCTGATGATTTTTCACCAGAGAGCCAGAATAGTTTGCCTTCCTTTGGCACAGATTTTGTCCGGAACAACTACTGCAACTCAATGAAACCTGGCCCTGTATCGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACGGCCTGTTGACAGTGGTTCGCATGGTACTGGTAGCCCAGGAGACGATAGCAGTAAGGGCGGCAATGAAACTGAAGGCATGAACAACCCTCTTGAGGATTCTTTGATTTACTCAAAATTGCTTGACAGACTTGATGGCCAGCACCAAATAGCCTCAACTATCGAGGCTTGCTATTTGTGA 1782 0.4815 MNRQVLPPLPKNASTVDPKIWRAIAGAAVHIPAVNSRVYYFPQGHMDQASSPPSNLSPQLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFAAIFPRVPAPEADDGERIFSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPYQSLVITDVHGMAWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGVMFIGIRRAVRYVPARSANDAARLCLPICGVRNRVDDEDEERQVEEKCREEFSRNGKGKLSPKSVAEAAELAAQGLAFEVVYYPKAGWSDFVLKAEVVDVAMSVTWIPGMRIKMAVETDDSSRTTWFQGVVSSVSVPDHGPWGGSPWRMLQITWDEPEVLQTSKWVSPWQIELLSTTPSLHTPFPSIKRLRGPHGVLTDGDPFSITAFTNSTMGQLNQSLLSYGTFPAGMQGARHDLFSVSSFSNFPGENPRLCMSNSFGNNAVLGLKSLSTELNVGSSQSDDFSPESQNSLPSFGTDFVRNNYCNSMKPGPVSFQLFGAVIQTERPVDSGSHGTGSPGDDSSKGGNETEGMNNPLEDSLIYSKLLDRLDGQHQIASTIEACYL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01818 593 SMART B3_2 117 219 IPR003340 GO:0003677
Vifa2g01818 593 Gene3D - 315 388 - -
Vifa2g01818 593 Gene3D - 114 219 IPR015300 -
Vifa2g01818 593 MobiDBLite consensus disorder prediction 537 564 - -
Vifa2g01818 593 FunFam Auxin response factor 115 219 - -
Vifa2g01818 593 MobiDBLite consensus disorder prediction 535 564 - -
Vifa2g01818 593 SUPERFAMILY DNA-binding pseudobarrel domain 113 228 IPR015300 -
Vifa2g01818 593 CDD B3_DNA 115 217 IPR003340 GO:0003677
Vifa2g01818 593 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa2g01818 593 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Vifa2g01818 593 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Vifa2g01818 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 552 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01818 Vifa-Chr2 471879529 471882287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01818 12 559 B3 DNA Binding Superfamily AT1G77850 47.611 5.41e-165 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa2g01818 B3 2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01818 - - qsu:112025063 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01818 2 471879529 471882287 Vifa2g01818 2 471879529 471882287 ECH