Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01814 ATGGGAAACACCACAGATCTAGATGTTCTTATCTCACAGCTTCAACAAACATACAAACAAGTTAAAACTGACGAAACATCCATGCGATTAGAAGATTTGTTTCCAGTGTTTCGCAAGTTCAAGCTGCTCTATAATGATCTACTGAATCCACCTAGAGAGGATATCAAGCTTCTCATCAAAGAAAACCACGCCGAACCAAGGTTTGACAAAAGGAGGATTTCGAGGGAAATTCTTGAAGAGCATTTTCAGAAGAAAATAACTGGTGTTTCTCAGAATCCGGAATTTACGGATGATTCGGATTGGTTTTCGGATTGGGATTCGGATATACCGTTGAGTATATTGGAGCTTGAAGTTGCATTGAATAAACAATACGCTGATAGTATAAATGATAGGGATATGGTTACATACGGGGTTGTTGAGACTGTTGTTGTTGCTGCTTCTAGTGATGGTGGTGGTATCAGTGGAATTCATCCACCTTTGATTAAGGCGCCGAAATTGGCTCCGATAAGGGAAGCGGAAGTTGGTATTGGTAGGGTAAGTTTGAAGAGAGAAGAGGAAGAGGGGGTGGTGGATGATATGAATAGGATAGCTGAGATTCTTGTTAGCCTTTCAGAATCATCTTTGTTTAGTACTACTTACAATGAATATGATTCATCTAGGACTGCCATGGAACCTAGGTCCAATAATGTGTCTCCTAACGGGAGAATTAAGCATATTATTATCCCTGGATGCTGGCAAAAGGGTCATTTTTTGGGTGGAGGTTCGTTTGGATCTGTCTATGAAGGCATTTCTGACGATGGAATCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAAGGGGATCAGGGAAAACAAAGTGTCTATCAGCTGGAGCAGGAAATTGCACTTTTGAGTCGTTTTGAACATGATAATATAGTTCAATACTATGGCACTGAAATGGATGAATCCAAGCTTCATATCTTTATTGAGCTTGTAACCGGAGGTTCTCTTAGAAGCCTCTATCAGAAGTATACTCTCCGAGATTCTCTAGTATCTGCCTATACAAGACAGATTCTATGTGGTTTGAAGTATCTTCACGACCAAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGCATGCAAGTGGATCTGTCAAACTTGCAGATTTTGGGTTAGCAAAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGGACTGCATTCTGGATGGCTCCTGAGGTTGTGAAAGGAAAGAACAAAGGTTATGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGCGCTGGAGATGTTAACGGGACAAATTCCATACTCCAATTTGGAATGTATGCAGGCAATATTTAGAATTGGAAAAGGTGTGCTACCTCCTATTCCTGATACTCTTTCAAGAGATGCAAAAGATTTTATCATGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCCTTTCTCCAAAGGCCACTTTCACAGTCTTCATCTCCTTACATTCATGGCAGAAGGGTTTAA 1548 0.405 MGNTTDLDVLISQLQQTYKQVKTDETSMRLEDLFPVFRKFKLLYNDLLNPPREDIKLLIKENHAEPRFDKRRISREILEEHFQKKITGVSQNPEFTDDSDWFSDWDSDIPLSILELEVALNKQYADSINDRDMVTYGVVETVVVAASSDGGGISGIHPPLIKAPKLAPIREAEVGIGRVSLKREEEEGVVDDMNRIAEILVSLSESSLFSTTYNEYDSSRTAMEPRSNNVSPNGRIKHIIIPGCWQKGHFLGGGSFGSVYEGISDDGIFFAVKEVSLLDQGDQGKQSVYQLEQEIALLSRFEHDNIVQYYGTEMDESKLHIFIELVTGGSLRSLYQKYTLRDSLVSAYTRQILCGLKYLHDQNVVHRDIKCANILVHASGSVKLADFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKNKGYGLPADVWSLGCTALEMLTGQIPYSNLECMQAIFRIGKGVLPPIPDTLSRDAKDFIMQCLQVNPDDRPTAAQLLNHPFLQRPLSQSSSPYIHGRRV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01814 515 FunFam Mitogen-activated protein kinase 1, putative, expressed 243 510 - -
Vifa2g01814 515 ProSitePatterns Protein kinases ATP-binding region signature. 251 273 IPR017441 GO:0005524
Vifa2g01814 515 SUPERFAMILY Protein kinase-like (PK-like) 234 503 IPR011009 -
Vifa2g01814 515 Pfam Protein kinase domain 246 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01814 515 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 184 507 - -
Vifa2g01814 515 ProSiteProfiles Protein kinase domain profile. 245 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01814 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Vifa2g01814 515 SMART serkin_6 245 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01814 515 Gene3D Transferase(Phosphotransferase) domain 1 245 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01814 Vifa-Chr2 470895447 470910324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01814 210 502 MAP Kinase Kinase Kinase AT4G08500 67.007 8.36e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa2g01814 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01814 K13414 - gmx:100819999 550.051