Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01813 ATGGATTCCAAGAAGCTTCGAAGAAAACCTAAACTCGATCGTCGTAATGCTCTAAAGTACTTCGATTACGACGCTGGATCATCTTCCTCTTCCTCTTCGTCTGATGATTCTTCTGGTTCGCTTTATACTCGTTCGATGGAGTTGTATGATCGGACTAGTTTTCGAATTGAAGGTGTTGAAGGTGAGCTTGATCGGATTTGTAAGAGTTTGGGACTTTCTGGACCGGAGGATTTTTCTATTCCGGCTGCTGCTTGGGAGGCTATGAAGGTTCGATATTCTTCGGATAGTCTCCCGAGTTTGAAGCTTGGAGAGGTTGATTTTCGGGAGAAGGTAGATGAGGTGAGAGAATTAGAAGAGGAAGGTGGATTGAATAAGAAATGTGAAGATAGTGTTATGGATATGGATAGGGTTACAGATGAGGTTGTTCAGACTGTTGTCGTTGCTGCTTCTAGTGGTGGTATCAGTGGAATTCATCCACCTTTGATTAAGGTGCCGGAGTTGGCTCCGGTAAGGGAAGGGGAAGTGGTCGAGAAAGAAGGTGAGGAAGTTGGTATTGGCAGGGGAAGTTTGAAGAGAGAAGAGGAAGAGGGGGTGGTGGATAATTCCGATGAGATTGCTGAGATTGTTGTTGGCCTTTCGGAATCATCTATGTTTAGTACTTCCAACGAAGATGATTCATCTAGGACTGCCGTGGAACCTAGGTCCAATGATGTGTGTCCTAACGGGAGAATTGAGCGTATTATTACCCCTGGATGCTGGCAAAAGGGTCAGTTTTTGGGTGGAGGTTCGTTTGGATCTGTCTTTGAAGGAATTTCTGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAAGGGGATCAGGGAAAACAAAGTGTCTACCAGCTGGAGCAGGAAATTGCACTTTTGAGTCGTTTTGAACATGATAATATCGTTCAATACTATGGCACTGAAATGGATGAATCCAAGCTTCATATCTTTATTGAGCTTGTGACCAAAGGTTCTCTTAGAAGCCTCTATCAGAGGTATACTCTCCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCACAATCAAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGCATGCAAGTGGATCTGTCAAACTTGCAGATTTTGGGTTAGCGAAGGCAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAGCATTCTGGATGGCCCCAGAGGTTGTGAAAGGAAAGAACAAAGGTTATGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTGGAGATGCTAACGGGACAAATTCCATACTCCAATTTGGAATGTATGCAGGCAATATTTAGAATTGGAAAAGGGGTGCTACCTCCTATTCCTGATACTCTTTCAAGAGATGCAAAAGATTTTATCATGCAGTGCCTTCAAGTTAATCCTGACGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCCTTTCTCCAACGGCCACTTTCACAGCCTTCATCTCCTTACATTCATGGCAAAAGGGGTTAA 1572 0.4332 MDSKKLRRKPKLDRRNALKYFDYDAGSSSSSSSSDDSSGSLYTRSMELYDRTSFRIEGVEGELDRICKSLGLSGPEDFSIPAAAWEAMKVRYSSDSLPSLKLGEVDFREKVDEVRELEEEGGLNKKCEDSVMDMDRVTDEVVQTVVVAASSGGISGIHPPLIKVPELAPVREGEVVEKEGEEVGIGRGSLKREEEEGVVDNSDEIAEIVVGLSESSMFSTSNEDDSSRTAVEPRSNDVCPNGRIERIITPGCWQKGQFLGGGSFGSVFEGISDDGFFFAVKEVSLLDQGDQGKQSVYQLEQEIALLSRFEHDNIVQYYGTEMDESKLHIFIELVTKGSLRSLYQRYTLRDSQVSAYTRQILHGLKYLHNQNVVHRDIKCANILVHASGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGKNKGYGLPADVWSLGCTVLEMLTGQIPYSNLECMQAIFRIGKGVLPPIPDTLSRDAKDFIMQCLQVNPDDRPTAAQLLNHPFLQRPLSQPSSPYIHGKRG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01813 523 SUPERFAMILY Protein kinase-like (PK-like) 243 513 IPR011009 -
Vifa2g01813 523 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Vifa2g01813 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Vifa2g01813 523 ProSiteProfiles Protein kinase domain profile. 253 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01813 523 Pfam Protein kinase domain 254 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01813 523 MobiDBLite consensus disorder prediction 216 236 - -
Vifa2g01813 523 SMART serkin_6 253 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01813 523 Gene3D Transferase(Phosphotransferase) domain 1 252 519 - -
Vifa2g01813 523 FunFam Mitogen-activated protein kinase 1, putative, expressed 251 518 - -
Vifa2g01813 523 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 31 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01813 Vifa-Chr2 470123316 470129967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01813 220 510 MAP Kinase Kinase Kinase AT4G08500 67.466 1.72e-134 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa2g01813 Pkinase 5.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01813 K13414 - gmx:100819999 706.442