Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01811 ATGCTTTCGTTCATCTGCACCTTGTTATTGCCGGCGATGACCGGGGAACGATGTTACCGCCGCAAGAATATGGTGGAAGACGCCTCGAGGCCCTCACCGGCCAGTTTTCCGGCCTCTTTGGAAATTGATTACTTCTCCCAGGCGAGGAAAGCGCTCAGCGAGCGTTGTCCTTTCGATGTTGCCGAGGAGACCTCGACTTCTGCTGCTGTTACTCTGCCGAGTGGGTTAGCAAGTTTGTTGAGCCGCCACGGGGATAACCGGAAGCGGCAAAAGAAGTCTCATTCCGGTGGCGGTGATAAGAAGAAGAAATCCTCTAGACCTGGCGAGAAGTTGCGCGGTTTTGATGTTTGGGTTGAGACGGAGGAGTGTTTTAGGGACTTGAACTTGTCTGATATTGACACGTTATTGGAAGCTTCTACTTCTTATAGTTTAGCTTCTCGTGAGTGCTATACAATTCCGCCTTTGGGAAATTCTCCAAGGTTTAATGTAGTTAGTAGTGAGGATGAGAAGAAGTCTGTTTCATTATTCAATGTAGTTAGTAGTGAGAATGAGAAGAATGTTGTTGAAGAGATAAACAAGGAGAATGGTCCCTTGGGAATTGAGTTAAGTGACGTAGTTGAATTGGAAAAAGCTTTGCCTAATGATGACAAGAATTGTGATGCTTCTGATTCCTGTGATAGTTTAGAGTGGTTTTTAGGTAGTAGGAATAGGATTTTTTTAGCTTCTGAGCGTCCATCCAAGAAAAGGAAGCTTTTGGGTGGTGATGCTGGTTTGGAGAAGGTTTTGATGACTAGTTCTTGTCATGGGGACCAACCTTGTTGTCATTATTGTGGCAGAGGAGATTCTGGCACGGATTCAAACAGGTTAATAGTCTGCGCTTTTTGTAAAGTTGCAGTTCATTGGAAGTGCTATGGTATACATGATGATGTAGATGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGGGTGATGTTGATGATTCGGTGAGTCCATGTGTTCTTTGCTCAAAGAAGGGCGGTGCTTTAAAACCAGTTAATAGTGTTGATGAAGCTGTTGAGTCTGCCCAGTTTGTGCACCTGTATTGTTGTCTGTGGATGCCGGAGGTTTACATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATCTGGGAGGTATCAAGGAAACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTAAAATGCGGCGCGTGTGTTCGGTGCAGTCATGGATCATGCAGAACTTCTTTTCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAACAGAAGCATCTTGCCATTGGGAGGCTCTATTGCAGTTGGCAATGAATTTCCAGAAGCTAATAACCTTCCAGTGACGTTGCCAGTAAAGAGTGAACACAATGTAAAAAGTGGTTGCAGAAATGGAGGGTTGGAATCTGATACCAATCCAAACGTTTTGAACCATAATGAACCTCCTGACGGAGGATTGTCTGTCTGCACGGATAGTGCGCGAAATATGTTGGGATGTGGCGCTGTGCCACCACATAATATTGAGGTGGCAGGGAGAACCAACGGGAATGTTAATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAAAAGTTGATTGAGAGAGGGAAGGTTGATGTAAACGAAGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATATCAATTTGCAGGAAGCTTATATGGCCTCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGAGCATTTCACAAAGGCTTGCCAAATCCGGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTAATATGTTCATCAGAGGGGGTTACTACTAGTGAGAATGGGGTATCAATTGATAAGCTCCTAGTTCATGAGTGTGAAAATCCAGGAATTTCCAACAAAGCATCTGATGCCACTGAAACGAACTTAACGAAGTCTGATGATAAATTTCATCAGGTTCAAGGCAATGCTGATGAGCCCTACAAACCCAGCTTATCTGTATGCGTTCCAGAACAAAAGTCTACTAATTTGCAGAATGCTTCCACAGTTTCTGATCAGCACCATCCAGCTCATTCGGCTTCAGAACTACGTGTTCCTGGTTCCGGGAAAATGGAAGCAATCTCTAGTTACATTCACCCATACATTAACAAGAAATTGCTGCAGATTCGTAATTGCTTGGCCCCGGAGGATCTTATAGGTTTAAGTGGCTACAGAAATTCTTTGGTTGAATCCTCTGGAGCTAATAGCCCCTCAAGTAGTGAAAATCAGCAATTAATTTGCACCGACGTTTCCAACCCTGATGAAGTAAAGATAGAACAGTTGGTTAGGGATAAAAATACACAACTTTTCGAATTTTATTCAGAAGATGAGTTGGAGACGGAACTTTTATATTTTCAGCATAAACTGCTGCAGAGAGCAGTTGCAAAAAAGAGCCTTACTGAAAACTTAGTCTACAATGTTGCGAAGGGGTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGCTTGATCTTAGGGAGGCAAAGAAACTGGGTAGAAAAGAAAAAAAGCACCAGGAAGCGCAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCTGCAGCATCTTCCAGGGTATCTTCTTTTCGTAAAGATACCATTGATGAATCTGTGCAACACGAGAATTCATTTAAGTTGGATGCTTTAGGCGGGCGGACTGGTACATGTTCTCAGCCAATGCCACGCGCTAAAGAGACTCTTTCGAGAGTTGCTGTCACTAGAGCTTCATCAGAAAAATATTCGGATTTTTCTCTGCCAGGCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGTTCTGGTTGCAAGGTTGCGGTGCACTCTGTTTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTTCTGTGAATTGTGTGAAGACTTGTCCAAAAGTTCTGAGGCATCTGCTATAAATAGCTGGGAGAAGCCTTATTTTATTGCAGAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCCGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCGATTGAAGGAATGGAGACTGTGCGAAAAGGAGTTGATATTTGTTGTGTCTGCCACCGCAGGCATGGTGTTTGTATTAAATGTTGTTATGGTCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGGGGGCAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTCCAGAGCAGAGAGCAAAGTCTGAAAATCAAAAGCATGGAGTAGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGCGAAAGAATTGTCAAACGGGAAAAGATAAAGCGGGAGTTGGTTCTATGCTCACATGACATACTTGCCTTCAAAAGAGATCATATTGCTAGGTCTGTGCTTGTTCAGAGTCCTTTCGTCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGCCACCACAGAGGGATACAGATCATGCAGCGCGCTCCAAAGATCAGATGATGTAACTGTGGATAGTTCAGTTTCAGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCTCAAAGTCAATATAACCACCAGATTCCAGAGAAGATGCAATTTTCTGGCAAACAGATTCCCCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGATGGATGGAGAACCAAATCTCGAAAGTTACAGACTACTGAAACATTTGGAAAAGAGCTTGTCATGACGTCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCCGCAGATTGCCTTTCAAATGGCAAGCAGTCTAATGAAGATGTATATGCTAGTAGACCAGGGGAACATGACAGGTAG 4230 0.4307 MLSFICTLLLPAMTGERCYRRKNMVEDASRPSPASFPASLEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLSRHGDNRKRQKKSHSGGGDKKKKSSRPGEKLRGFDVWVETEECFRDLNLSDIDTLLEASTSYSLASRECYTIPPLGNSPRFNVVSSEDEKKSVSLFNVVSSENEKNVVEEINKENGPLGIELSDVVELEKALPNDDKNCDASDSCDSLEWFLGSRNRIFLASERPSKKRKLLGGDAGLEKVLMTSSCHGDQPCCHYCGRGDSGTDSNRLIVCAFCKVAVHWKCYGIHDDVDESWLCSWCKQKGDVDDSVSPCVLCSKKGGALKPVNSVDEAVESAQFVHLYCCLWMPEVYIDDLKKMEPVMNLGGIKETRRKLVCNVCKLKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQENRSILPLGGSIAVGNEFPEANNLPVTLPVKSEHNVKSGCRNGGLESDTNPNVLNHNEPPDGGLSVCTDSARNMLGCGAVPPHNIEVAGRTNGNVNASDSPSFALVLKKLIERGKVDVNEVALEIGISPDTLTANINLQEAYMASDVQHKIVNWLKAHVYTGAFHKGLPNPVAVNVKSVPPRRRTISNIRILKDNKVICSSEGVTTSENGVSIDKLLVHECENPGISNKASDATETNLTKSDDKFHQVQGNADEPYKPSLSVCVPEQKSTNLQNASTVSDQHHPAHSASELRVPGSGKMEAISSYIHPYINKKLLQIRNCLAPEDLIGLSGYRNSLVESSGANSPSSSENQQLICTDVSNPDEVKIEQLVRDKNTQLFEFYSEDELETELLYFQHKLLQRAVAKKSLTENLVYNVAKGLPQEIDKTHQQRWDAVIANQYLLDLREAKKLGRKEKKHQEAQAVLAAATAAAAASSRVSSFRKDTIDESVQHENSFKLDALGGRTGTCSQPMPRAKETLSRVAVTRASSEKYSDFSLPGSDFSKEQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWFCELCEDLSKSSEASAINSWEKPYFIAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQIDAIEGMETVRKGVDICCVCHRRHGVCIKCCYGHCLTTFHPSCARSAGLFMIVRTAGGKMQHKAYCEKHSPEQRAKSENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHIARSVLVQSPFVLPDGSSESATTSLKATTEGYRSCSALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSQYNHQIPEKMQFSGKQIPRRASATSRNISEEDGWRTKSRKLQTTETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNGKQSNEDVYASRPGEHDR 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01811 1409 SUPERFAMILY FYVE/PHD zinc finger 994 1045 IPR011011 -
Vifa2g01811 1409 MobiDBLite consensus disorder prediction 725 746 - -
Vifa2g01811 1409 SUPERFAMILY FYVE/PHD zinc finger 265 324 IPR011011 -
Vifa2g01811 1409 MobiDBLite consensus disorder prediction 85 99 - -
Vifa2g01811 1409 ProSitePatterns Zinc finger PHD-type signature. 274 319 IPR019786 -
Vifa2g01811 1409 Coils Coil 1194 1214 - -
Vifa2g01811 1409 ProSiteProfiles Zinc finger PHD-type profile. 998 1047 IPR019787 -
Vifa2g01811 1409 ProSitePatterns Zinc finger PHD-type signature. 1001 1044 IPR019786 -
Vifa2g01811 1409 Pfam PHD-zinc-finger like domain 1067 1173 - -
Vifa2g01811 1409 Pfam PHD-zinc-finger like domain 331 449 - -
Vifa2g01811 1409 PANTHER PHD FINGER PROTEINS 72 936 - -
Vifa2g01811 1409 Pfam PHD-finger 1012 1045 - -
Vifa2g01811 1409 Pfam PHD-finger 287 320 - -
Vifa2g01811 1409 CDD ePHD 1068 1173 - -
Vifa2g01811 1409 ProSiteProfiles Zinc finger PHD-type profile. 271 322 IPR019787 -
Vifa2g01811 1409 ProSiteProfiles Extended PHD (ePHD) domain profile. 329 450 IPR034732 -
Vifa2g01811 1409 ProSiteProfiles Extended PHD (ePHD) domain profile. 1065 1174 IPR034732 -
Vifa2g01811 1409 SMART PHD_3 273 320 IPR001965 -
Vifa2g01811 1409 SMART PHD_3 1120 1174 IPR001965 -
Vifa2g01811 1409 SMART PHD_3 1000 1045 IPR001965 -
Vifa2g01811 1409 SMART PHD_3 394 450 IPR001965 -
Vifa2g01811 1409 MobiDBLite consensus disorder prediction 1387 1409 - -
Vifa2g01811 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 978 1057 IPR013083 -
Vifa2g01811 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 328 IPR013083 -
Vifa2g01811 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 452 IPR013083 -
Vifa2g01811 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1065 1176 IPR013083 -
Vifa2g01811 1409 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01811 Vifa-Chr2 469148795 469158947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01811 274 456 C2H2 Transcription Factor Family AT3G14740 29.032 3.84e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01811 - - tpra:123896915 2234.14