Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01810 ATGCTTTCGTTCATCTGCACCTTGTTATTGCCGGCGATGACCGGGGAACGATGTTACCGCCGCAAGAATATGGTGGAAGACGCCTCGAGGCCCTCACCGGCCAGTTTTCCGGCCTCTTTGGAAATTGATTACTTCTCCCAGGCGAGGAAAGCGCTCAGCGAGCGTTGTCCTTTCGATGTTGCCGAGGAGACCTCGACTTCTGCTGCTGTTACTCTGCCGAGTGGGTTAGCAAGTTTGTTGAGCCGCCACGGGGATAACCGGAAGCGGCAAAAGAAGTCTCATTCCGGTGGCGGTGATAAGAAGAAGAAATCCTCTAGACCTGGCGAGAAGTTGCGCGGTTTTGATGTTTGGGTTGAGACGGAGGAGTGTTTTAGGGACTTGAACTTGTCTGATATTGACACGTTATTGGAAGCTTCTACTTCTTATAGTTTAGCTTCTCGTGAGTGCTATACAATTCCGCCTTTGGGAAATTCTCCAAGGTTTAATGTAGTTAGTAGTGAGGATGAGAAGAAGTCTGTTTCATTATTCAATGTAGTTAGTAGTGAGAATGAGAAGAATGTTGTTGAAGAGATAAACAAGGAGAATGGTCCCTTGGGAATTGAGTTAAGTGACGTAGTTGAATTGGAAAAAGCTTTGCCTAATGATGACAAGAATTGTGATGCTTCTGATTCCTGTGATAGTTTAGAGTGGTTTTTAGGTAGTAGGAATAGGATTTTTTTAGCTTCTGAGCGTCCATCCAAGAAAAGGAAGCTTTTGGGTGGTGATGCTGGTTTGGAGAAGGTTTTGATGACTAGTTCTTGTCATGGGGACCAACCTTGTTGTCATTATTGTGGCAGAGGAGATTCTGGCACGGATTCAAACAGGTTAATAGTCTGCGCTTTTTGTAAAGTTGCAGTTCATTGGAAGTGCTATGGTATACATGATGATGTAGATGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGGGTGATGTTGATGATTCGGTGAGTCCATGTGTTCTTTGCTCAAAGAAGGGCGGTGCTTTAAAACCAGTTAATAGTGTTGATGAAGCTGTTGAGTCTGCCCAGTTTGTGCACCTGTATTGTTGTCTGTGGATGCCGGAGGTTTACATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATCTGGGAGGTATCAAGGAAACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTAAAATGCGGCGCGTGTGTTCGGTGCAGTCATGGATCATGCAGAACTTCTTTTCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAACAGAAGCATCTTGCCATTGGGAGGCTCTATTGCAGTTGGCAATGAATTTCCAGAAGCTAATAACCTTCCAGTGACGTTGCCAGTAAAGAGTGAACACAATGTAAAAAGTGGTTGCAGAAATGGAGGGTTGGAATCTGATACCAATCCAAACGTTTTGAACCATAATGAACCTCCTGACGGAGGATTGTCTGTCTGCACGGATAGTGCGCGAAATATGTTGGGATGTGGCGCTGTGCCACCACATAATATTGAGGTGGCAGGGAGAACCAACGGGAATGTTAATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAAAAGTTGATTGAGAGAGGGAAGGTTGATGTAAACGAAGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATATCAATGAAGCTTATATGGCCTCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGAGCATTTCACAAAGGCTTGCCAAATCCGGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTAATATGTTCATCAGAGGGGGTTACTACTAGTGAGAATGGGGTATCAATTGATAAGCTCCTAGTTCATGAGTGTGAAAATCCAGGAATTTCCAACAAAGCATCTGATGCCACTGAAACGAACTTAACGAAGTCTGATGATAAATTTCATCAGGTTCAAGGCAATGCTGATGAGCCCTACAAACCCAGCTTATCTGTATGCGTTCCAGAACAAAAGTCTACTAATTTGCAGAATGCTTCCACAGTTTCTGATCAGCACCATCCAGCTCATTCGGCTTCAGAACTACGTGTTCCTGGTTCCGGGAAAATGGAAGCAATCTCTAGTTACATTCACCCATACATTAACAAGAAATTGCTGCAGATTCGTAATTGCTTGGCCCCGGAGGATCTTATAGGTTTAAGTGGCTACAGAAATTCTTTGGTTGAATCCTCTGGAGCTAATAGCCCCTCAAGTAGTGAAAATCAGCAATTAATTTGCACCGACGTTTCCAACCCTGATGAAGTAAAGATAGAACAGTTGGTTAGGGATAAAAATACACAACTTTTCGAATTTTATTCAGAAGATGAGTTGGAGACGGAACTTTTATATTTTCAGCATAAACTGCTGCAGAGAGCAGTTGCAAAAAAGAGCCTTACTGAAAACTTAGTCTACAATGTTGCGAAGGGGTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGCTTGATCTTAGGGAGGCAAAGAAACTGGGTAGAAAAGAAAAAAAGCACCAGGAAGCGCAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCTGCAGCATCTTCCAGGGTATCTTCTTTTCGTAAAGATACCATTGATGAATCTGTGCAACACGAGAATTCATTTAAGTTGGATGCTTTAGGCGGGCGGACTGGTACATGTTCTCAGCCAATGCCACGCGCTAAAGAGACTCTTTCGAGAGTTGCTGTCACTAGAGCTTCATCAGAAAAATATTCGGATTTTTCTCTGCCAGGCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGTTCTGGTTGCAAGGTTGCGGTGCACTCTGTTTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTTCTGTGAATTGTGTGAAGACTTGTCCAAAAGTTCTGAGGCATCTGCTATAAATAGCTGGGAGAAGCCTTATTTTATTGCAGAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCCGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCGATTGAAGGAATGGAGACTGTGCGAAAAGGAGTTGATATTTGTTGTGTCTGCCACCGCAGGCATGGTGTTTGTATTAAATGTTGTTATGGTCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGGGGGCAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTCCAGAGCAGAGAGCAAAGTCTGAAAATCAAAAGCATGGAGTAGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGCGAAAGAATTGTCAAACGGGAAAAGATAAAGCGGGAGTTGGTTCTATGCTCACATGACATACTTGCCTTCAAAAGAGATCATATTGCTAGGTCTGTGCTTGTTCAGAGTCCTTTCGTCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGCCACCACAGAGGGATACAGATCATGCAGCGCGCTCCAAAGATCAGATGATGTAACTGTGGATAGTTCAGTTTCAGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCTCAAAGTCAATATAACCACCAGATTCCAGAGAAGATGCAATTTTCTGGCAAACAGATTCCCCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGATGGATGGAGAACCAAATCTCGAAAGTTACAGACTACTGAAACATTTGGAAAAGAGCTTGTCATGACGTCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCCGCAGATTGCCTTTCAAATGGCAAGCAGTCTAATGAAGATGTATATGCTAGTAGACCAGGGGAACATGACAGGTAG 4224 0.4306 MLSFICTLLLPAMTGERCYRRKNMVEDASRPSPASFPASLEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLSRHGDNRKRQKKSHSGGGDKKKKSSRPGEKLRGFDVWVETEECFRDLNLSDIDTLLEASTSYSLASRECYTIPPLGNSPRFNVVSSEDEKKSVSLFNVVSSENEKNVVEEINKENGPLGIELSDVVELEKALPNDDKNCDASDSCDSLEWFLGSRNRIFLASERPSKKRKLLGGDAGLEKVLMTSSCHGDQPCCHYCGRGDSGTDSNRLIVCAFCKVAVHWKCYGIHDDVDESWLCSWCKQKGDVDDSVSPCVLCSKKGGALKPVNSVDEAVESAQFVHLYCCLWMPEVYIDDLKKMEPVMNLGGIKETRRKLVCNVCKLKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQENRSILPLGGSIAVGNEFPEANNLPVTLPVKSEHNVKSGCRNGGLESDTNPNVLNHNEPPDGGLSVCTDSARNMLGCGAVPPHNIEVAGRTNGNVNASDSPSFALVLKKLIERGKVDVNEVALEIGISPDTLTANINEAYMASDVQHKIVNWLKAHVYTGAFHKGLPNPVAVNVKSVPPRRRTISNIRILKDNKVICSSEGVTTSENGVSIDKLLVHECENPGISNKASDATETNLTKSDDKFHQVQGNADEPYKPSLSVCVPEQKSTNLQNASTVSDQHHPAHSASELRVPGSGKMEAISSYIHPYINKKLLQIRNCLAPEDLIGLSGYRNSLVESSGANSPSSSENQQLICTDVSNPDEVKIEQLVRDKNTQLFEFYSEDELETELLYFQHKLLQRAVAKKSLTENLVYNVAKGLPQEIDKTHQQRWDAVIANQYLLDLREAKKLGRKEKKHQEAQAVLAAATAAAAASSRVSSFRKDTIDESVQHENSFKLDALGGRTGTCSQPMPRAKETLSRVAVTRASSEKYSDFSLPGSDFSKEQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWFCELCEDLSKSSEASAINSWEKPYFIAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQIDAIEGMETVRKGVDICCVCHRRHGVCIKCCYGHCLTTFHPSCARSAGLFMIVRTAGGKMQHKAYCEKHSPEQRAKSENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHIARSVLVQSPFVLPDGSSESATTSLKATTEGYRSCSALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSQYNHQIPEKMQFSGKQIPRRASATSRNISEEDGWRTKSRKLQTTETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNGKQSNEDVYASRPGEHDR 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01810 1407 CDD ePHD 1066 1171 - -
Vifa2g01810 1407 SMART PHD_3 273 320 IPR001965 -
Vifa2g01810 1407 SMART PHD_3 1118 1172 IPR001965 -
Vifa2g01810 1407 SMART PHD_3 394 450 IPR001965 -
Vifa2g01810 1407 SMART PHD_3 998 1043 IPR001965 -
Vifa2g01810 1407 SUPERFAMILY FYVE/PHD zinc finger 992 1043 IPR011011 -
Vifa2g01810 1407 SUPERFAMILY FYVE/PHD zinc finger 265 324 IPR011011 -
Vifa2g01810 1407 Pfam PHD-finger 1010 1043 - -
Vifa2g01810 1407 Pfam PHD-finger 287 320 - -
Vifa2g01810 1407 MobiDBLite consensus disorder prediction 1385 1407 - -
Vifa2g01810 1407 MobiDBLite consensus disorder prediction 85 99 - -
Vifa2g01810 1407 ProSitePatterns Zinc finger PHD-type signature. 274 319 IPR019786 -
Vifa2g01810 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1063 1174 IPR013083 -
Vifa2g01810 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 452 IPR013083 -
Vifa2g01810 1407 ProSiteProfiles Zinc finger PHD-type profile. 271 322 IPR019787 -
Vifa2g01810 1407 PANTHER PHD FINGER PROTEINS 72 934 - -
Vifa2g01810 1407 ProSitePatterns Zinc finger PHD-type signature. 999 1042 IPR019786 -
Vifa2g01810 1407 ProSiteProfiles Extended PHD (ePHD) domain profile. 329 450 IPR034732 -
Vifa2g01810 1407 MobiDBLite consensus disorder prediction 723 744 - -
Vifa2g01810 1407 Pfam PHD-zinc-finger like domain 1065 1171 - -
Vifa2g01810 1407 Pfam PHD-zinc-finger like domain 331 449 - -
Vifa2g01810 1407 ProSiteProfiles Zinc finger PHD-type profile. 996 1045 IPR019787 -
Vifa2g01810 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1055 IPR013083 -
Vifa2g01810 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 328 IPR013083 -
Vifa2g01810 1407 Coils Coil 1192 1212 - -
Vifa2g01810 1407 ProSiteProfiles Extended PHD (ePHD) domain profile. 1063 1172 IPR034732 -
Vifa2g01810 1407 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01810 Vifa-Chr2 469148795 469158947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01810 274 456 C2H2 Transcription Factor Family AT3G14740 29.032 4.43e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01810 - - tpra:123896915 2239.15