Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01803 ATGTCTACTGCCCTTGAATACAGTGTCGTTGAACCCTTTAAGTCAATTACACCATTGCTATCGAATTCCTCAAACAATGAGGAAGATGAACAGTATTCAAACATGGTCAAAAACATAATCATAAAGGGAAGATCCGAAATAGAACTATCAGTGTTAGACCCTCGTGATGAAGGAACCTCAGATCACTGGATTCAAAGAAACACTTCCTTGATCCGTCTCACCGGCAAACACCCTTTCAACTCAGAGCCACCACTCCAAACACTCATGCACCACGGCTTCATAACACCGGTTCAACTCCACTACGTCCGCAACCATGGGCCTGTTCCCAAGGCCCGTTGGGCCGACTGGACCGTAGAAGTAACCGGCCTAGTGAGAAACCCAACCAGTTTCACAATGGACGAACTCGTCAACGACTTCCCCAGCCGCGAATTTCCGGTGACACTCGTTTGCTCCGGGAACCGCCGCAAGGAACAAAACATGGTGAAACAAACCATTGGCTTCAACTGGGGGCCGTCTGCTACCTCCACTTCGGTGTGGCGCGGTGTACCGTTGAGAAGCGTGCTCAAGCGTTGTGGAATCTATAACCGCAACAGTGGGGCTCTCTATGTTTGCTTTGAAGGCGCTGAGGAACTTCCTGGTGGCGGTGGGTGTAAATATGGAACTAGTATCTTGTATGAGGTTGCACTGGATCGTACCCGCGATATCGTTCTGGCGTACATGCAAAACGGTGATGTTTTATCTCCTGATCATGGGTTTCCTATTAGGGTTATTGTGCCTGGTTTCACTGCAGGGAGAATGGTGAAATGGTTGAAGCGCATCGTTGTTACAACCACAGAATCTGATAGCTATTATCATTACCATGATAACAGATTACTTCCCTCTCACGTTGATGCTGAGCTTGCCAATACAGAAGCTTGGTTCTATAAACCGGAGTATATTATCAACGAGTTGAACATAAACTCCGTGATAACGACGCCGTGTCACGGTGAGGTACTGGCGGTTGACTCAGAGACTACTCAGATGCCTTATTTACTTAGAGGCTATGCATATTCCGGGGGTGGCAGAAAGGTGACACGAGTTGAGGTGACGATGGACGGTGGTGAAACGTGGAAAGTATGCAGATTGGAGCATGCAGAGAAACCAAACAAATATGGTAAGTATTGGTGTTGGTGCTTTTGGTCGTTGGAGGTTGAAGTGTTGGAGTTGTTTGGAGGCAAAGAGATTGCTGTGCGTGCATGGGACTTGGCTAACAACACCCAGCCTCAGAATCTTAATTGGAATCTTATGGGCATGATGAACAACTGCTGGTTCAGAATCAAAACAAACATGTACAAGCCTAATAAGGGAGACATTGGTATAATGTTTGAGCATCCAACTCAACCAGGAAATCAATCTGGTGGTTGGATGGTCAAAGAAAAAGAACAATCATATCCCAAATTATCAAACTCTGATCCAACCAAGAAGATCAACGTTTCCTCATCACTGCACACAAACAGTACTAGTAGTACTAACTTAAAAATATTCACTATCTCTGAGGTGAAAAAACATAATAACTCTGAATCAGCTTGGATAATCATAGATAGTCATGTTTATGATTGCACTCCCTACCTCAAAGACCACCCTGGAGGTACCGATAGCATCCTCATCAACGCTGGCACTGATTGTACAGAGGAGTTTGAAGCCATCCATTCTGATAAAGCAAAGAAAATGCTTGATGATTACTTAATCGGCGAGCTCGTCACCACGGACGCCGATGGAAATAACATTGAAGTCACCGGAAAAGTTATCGTGACACAAATGCATGACAACGTGGCTTTAATAAACCCACGTGAGAAAGTCCCATGCAAGCTTGTGTCAAAAACATCTATCTCCCACAATGTTAGGATCTTCCGTTTTGCTTTACCTTATGAGGATCAACCATTGGGTTTACCAGTTGGGAAGCACTTATTTTTATGTGATACTATTGAAGATAAGCTATGCATGCGAGCTTTCACTCCTACAAGCAGTGTAGATGAAAAGGGTTATTTTGATCTATTGGTTAAGATTTATTTCAAAGGAGTTCATCCAAAGTTTCCAATAGGTGGCTTAATGTCTCAACATTTGGATTCATTGCCTATTGGTTCAGTTTTTGATATAAAAGGTCCATTGGGACATATTGAGTATACTGGTAAAGGAAATTTTCTTGTACGTGGAAAGAATAAGTTTGCAAAGAAGTTAGCAATGTTGGCTGGTGGAACTGGGATAACACCGATTTACCAAGTGGTTCAAGCGATAATAAAAGATCCAGAAGATTTCACTGAAATGCATGTTGTGTATGGTAATCAAAGTGAGGATGATATATTGCTAAGAGAAGAGTTGGATGCTTGGGCTGAGAAATATGAACGGTTGAAAGTGTGGTATGTGGTGCAAGAATGTAAAAGAGAAGATTGGGAATATAGTGTGGGGTTCATCACAGAAAGTATATTGAAGAAGCATGTTCCAGAACCAGAAGATGATACTGTAGCTTTGGCATGTGGACCACCAGCCATGATTCATGGGGTGCAATCACATTTGGAGAAATTGGGATATGATATCAAGAACAACTTGCTTGTGTTTTAG 2598 0.4319 MSTALEYSVVEPFKSITPLLSNSSNNEEDEQYSNMVKNIIIKGRSEIELSVLDPRDEGTSDHWIQRNTSLIRLTGKHPFNSEPPLQTLMHHGFITPVQLHYVRNHGPVPKARWADWTVEVTGLVRNPTSFTMDELVNDFPSREFPVTLVCSGNRRKEQNMVKQTIGFNWGPSATSTSVWRGVPLRSVLKRCGIYNRNSGALYVCFEGAEELPGGGGCKYGTSILYEVALDRTRDIVLAYMQNGDVLSPDHGFPIRVIVPGFTAGRMVKWLKRIVVTTTESDSYYHYHDNRLLPSHVDAELANTEAWFYKPEYIINELNINSVITTPCHGEVLAVDSETTQMPYLLRGYAYSGGGRKVTRVEVTMDGGETWKVCRLEHAEKPNKYGKYWCWCFWSLEVEVLELFGGKEIAVRAWDLANNTQPQNLNWNLMGMMNNCWFRIKTNMYKPNKGDIGIMFEHPTQPGNQSGGWMVKEKEQSYPKLSNSDPTKKINVSSSLHTNSTSSTNLKIFTISEVKKHNNSESAWIIIDSHVYDCTPYLKDHPGGTDSILINAGTDCTEEFEAIHSDKAKKMLDDYLIGELVTTDADGNNIEVTGKVIVTQMHDNVALINPREKVPCKLVSKTSISHNVRIFRFALPYEDQPLGLPVGKHLFLCDTIEDKLCMRAFTPTSSVDEKGYFDLLVKIYFKGVHPKFPIGGLMSQHLDSLPIGSVFDIKGPLGHIEYTGKGNFLVRGKNKFAKKLAMLAGGTGITPIYQVVQAIIKDPEDFTEMHVVYGNQSEDDILLREELDAWAEKYERLKVWYVVQECKREDWEYSVGFITESILKKHVPEPEDDTVALACGPPAMIHGVQSHLEKLGYDIKNNLLVF 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01803 865 FunFam Nitrate reductase [NADH] 717 865 - -
Vifa2g01803 865 Pfam Oxidoreductase NAD-binding domain 741 848 IPR001433 GO:0016491
Vifa2g01803 865 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 53 314 IPR036374 -
Vifa2g01803 865 Pfam Mo-co oxidoreductase dimerisation domain 312 442 IPR005066 GO:0016491|GO:0030151
Vifa2g01803 865 SMART Cyt_b5_2 508 580 IPR001199 -
Vifa2g01803 865 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 536 543 IPR018506 GO:0020037
Vifa2g01803 865 FunFam NADH-cytochrome b5 reductase 600 716 - -
Vifa2g01803 865 PANTHER SULFITE REDUCTASE 39 445 - -
Vifa2g01803 865 CDD eukary_NR_Moco 56 441 - -
Vifa2g01803 865 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 502 582 IPR036400 -
Vifa2g01803 865 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 610 722 IPR017927 GO:0016491
Vifa2g01803 865 FunFam Nitrate reductase 316 493 - -
Vifa2g01803 865 CDD cyt_b5_reduct_like 615 865 - -
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 662 669 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 766 775 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 778 789 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 810 826 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 834 842 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 539 549 IPR001709 GO:0016491
Vifa2g01803 865 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 740 759 IPR001709 GO:0016491
Vifa2g01803 865 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 505 580 IPR001199 -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 707 721 - -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 641 652 - -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 662 669 - -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 740 759 - -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 778 789 - -
Vifa2g01803 865 PRINTS Cytochrome B5 reductase signature 834 842 - -
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 146 157 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 230 246 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 386 396 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 263 276 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 424 437 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 411 423 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 172 187 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 314 326 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 93 109 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 247 260 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 359 371 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 157 169 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 71 85 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Eukaryotic molybdopterin domain signature 345 359 IPR008335 GO:0016491
Vifa2g01803 865 PRINTS Cytochrome B5 signature 555 562 IPR001199 -
Vifa2g01803 865 PRINTS Cytochrome B5 signature 530 540 IPR001199 -
Vifa2g01803 865 PRINTS Cytochrome B5 signature 540 554 IPR001199 -
Vifa2g01803 865 PRINTS Cytochrome B5 signature 567 579 IPR001199 -
Vifa2g01803 865 Pfam Cytochrome b5-like Heme/Steroid binding domain 510 579 IPR001199 -
Vifa2g01803 865 Gene3D - 500 584 IPR036400 -
Vifa2g01803 865 Pfam Oxidoreductase molybdopterin binding domain 105 284 IPR000572 -
Vifa2g01803 865 Gene3D Translation factors 602 716 - -
Vifa2g01803 865 PIRSF Nitr_rd_NADH 2 864 IPR012137 GO:0006809|GO:0042128|GO:0050464
Vifa2g01803 865 Gene3D - 55 306 IPR036374 -
Vifa2g01803 865 SUPERFAMILY Riboflavin synthase domain-like 605 723 IPR017938 -
Vifa2g01803 865 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 711 860 IPR039261 -
Vifa2g01803 865 Gene3D - 316 491 - -
Vifa2g01803 865 SUPERFAMILY E set domains 316 441 IPR014756 -
Vifa2g01803 865 FunFam Sulfite oxidase, mitochondrial 503 584 - -
Vifa2g01803 865 FunFam Nitrate reductase 57 306 - -
Vifa2g01803 865 Gene3D - 717 865 IPR039261 -
Vifa2g01803 865 Pfam Oxidoreductase FAD-binding domain 615 721 IPR008333 -
Vifa2g01803 865 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 122 157 IPR022407 GO:0043546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01803 Vifa-Chr2 467116426 467120156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01803 607 856 NADPH P450 reductases AT5G17770 36.364 4.05e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01803 K10534 - gmx:732634 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01803 2 467116426 467120156 Vifa2g01803 2 467116426 467120156 ECH