Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01796 ATGACTGCTTTGATTCACAAAATGGGTACAAAGGCGTTGCCTGCTGCAAAAAGCATGTTGTCTGATGCACTTAGAATAGAACCAAAAAATCAGATGCCTTGGTATTACTTGGGATTGGTTCACAAGCACGATGAAAGTTTCAACACTTTTTTTGAATATTTTGGAATGGTTGATTCTGCAACATGTATAGGTAAAATGGATCAAGTGAACACAACCCCGGAACCAGAAGGAGCATCTAATCCTACACAAGAAAGTACATGTCCAACTCAGGAGGTATCTTCTAATCCGAATCCAACACCTGAACCTGATATTGGGCAACAAGAAGAAATTGATACAATTTTAGAACCTGCATCAAAGAAACTTAGAAGTAATGTGTGGCAAGAATTTAAAAAGATGAAAGTGAATGGAAAAGATAAGGCTGAATGCATCTGGTGTAAAAAACAACTTAGTGGCACTTCAAAGAATGGAACAAATCACTTGAAAGGACATCTCTTGAGTTGTATTCAAAAAAAGATCAAGACTAGAAACCATGACAAAGGACAACCATTTCTCCTACCGACTATCTCAGAAGGAAAGCAAGAGTTGGGAATTGGAACTTATGATCCAGAACATGTGAAGAAGTTGATTGCTGAAGCTATTATTATGCACGATTATCCACTATCAATTGTGGATCACATTGAGTTGAATCTTGAGGTTCATTTATGTTCCATCCTCTCACACTAG 723 0.3748 MTALIHKMGTKALPAAKSMLSDALRIEPKNQMPWYYLGLVHKHDESFNTFFEYFGMVDSATCIGKMDQVNTTPEPEGASNPTQESTCPTQEVSSNPNPTPEPDIGQQEEIDTILEPASKKLRSNVWQEFKKMKVNGKDKAECIWCKKQLSGTSKNGTNHLKGHLLSCIQKKIKTRNHDKGQPFLLPTISEGKQELGIGTYDPEHVKKLIAEAIIMHDYPLSIVDHIELNLEVHLCSILSH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01796 240 PANTHER OS03G0264950 PROTEIN-RELATED 72 225 - -
Vifa2g01796 240 Pfam BED zinc finger 123 177 IPR003656 GO:0003677
Vifa2g01796 240 MobiDBLite consensus disorder prediction 67 102 - -
Vifa2g01796 240 ProSiteProfiles Zinc finger BED-type profile. 120 177 IPR003656 GO:0003677
Vifa2g01796 240 SMART bed5 120 170 - -
Vifa2g01796 240 SUPERFAMILY beta-beta-alpha zinc fingers 123 172 IPR036236 -
Vifa2g01796 240 MobiDBLite consensus disorder prediction 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01796 Vifa-Chr2 463850221 463851726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01796 13 44 Calmodulin-binding Proteins AT2G43040 68.750 1.62e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01796 - - tpra:123891726 190.274