Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01794 ATGGAGGAATTGCATAAAACCCTAAAGGATCGTGATTTAACCGTTCCCACCGTCCATGGAAAGGGTCGTTCTCTCTTCACTACTAGGGATTTTTACCCAGGAGAGGTGATTATTAGTCAAGAACCTTATGTTTGTGTTTCAACTCAGAAAAGGTGTGATGGTTGTTTCAGAACAACCAACCTAAGCAAGTGCTCACGTTGTCAAGTTGTTTGGTATTGTGGAACACCGTGTCAGAAATCGGCTTGGAGGTTGCATCGTCTTGAATGTGAAGCTCTTTCAAGGCTAGATGACCACAAGAGAAAATCTGTAACGCCGTCGATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAGTTGCAAAATGACAAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGATGCATTAGTGGCTCACATGTCTGACATTACAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAATGGCCTGAAATCAATATTAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCACATACCATTTGTGACGGTGAGTTGAGACCATTGGGAACTGGACTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCCGTATTGGTTTTTGAGGGAAGGATGGCATCAGTGCGTGCTTTACAGCACTTACCCAAGGGGACTGAGGTATTAATAAGTTATATAGAGACAGCAGGAAGCACTGTGATTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTGTTTGTCCTCTCTGCTCTAAAGTGGGTCAGTACGATGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGTACAACTGATGGAAAAGCATTCCAATGCCAAGAATGTGGGTTAATTAAAGACAAGGAAGAAATAAAGAAAATTGCAACTGAAATAAAATTGCTATCAGAAGAAGCTTCTAGTGCCGATTATCAAGAAGCTATATCTATATATAAAATGATAGAGAAACTGCAAACAAAGTTATATCATCCTTTCTCAATCTATTTGCTGCAAACACGAGAGACGATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGAGAAGCTTTAGCATATTGCAAAATGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGAAGACACAGAGGAAGCTGTTATATCATTGACCAAGGCTGTGGATATCCTAAGGATTACTCATGGTACAAATACTCCATTTGTTAAGGAACTTTTGATGATGTTGGAGGAAGCACGTGCAGAATTAACTTACAAGTCCTCTTCCAAAGAGGAGTAG 1422 0.4001 MEELHKTLKDRDLTVPTVHGKGRSLFTTRDFYPGEVIISQEPYVCVSTQKRCDGCFRTTNLSKCSRCQVVWYCGTPCQKSAWRLHRLECEALSRLDDHKRKSVTPSIRLMLKLYLRRKLQNDKIIPSTAMDNYKLVDALVAHMSDITEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDGELRPLGTGLYPVVSIINHSCLPNSVLVFEGRMASVRALQHLPKGTEVLISYIETAGSTVIRQKALKEQYLFTCVCPLCSKVGQYDDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLIKDKEEIKKIATEIKLLSEEASSADYQEAISIYKMIEKLQTKLYHPFSIYLLQTRETILKSLMKLEHWREALAYCKMTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLEDTEEAVISLTKAVDILRITHGTNTPFVKELLMMLEEARAELTYKSSSKEE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01794 473 ProSitePatterns Zinc finger MYND-type signature. 52 89 IPR002893 -
Vifa2g01794 473 Gene3D - 51 101 - -
Vifa2g01794 473 Pfam MYND finger 52 89 IPR002893 -
Vifa2g01794 473 SUPERFAMILY TPR-like 339 443 IPR011990 GO:0005515
Vifa2g01794 473 Coils Coil 315 335 - -
Vifa2g01794 473 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 18 459 - -
Vifa2g01794 473 SUPERFAMILY SET domain 13 243 IPR046341 -
Vifa2g01794 473 Pfam SET domain 22 243 IPR001214 GO:0005515
Vifa2g01794 473 ProSiteProfiles SET domain profile. 6 244 IPR001214 GO:0005515
Vifa2g01794 473 SMART set_7 11 250 IPR001214 GO:0005515
Vifa2g01794 473 Gene3D - 102 186 - -
Vifa2g01794 473 Gene3D SET domain 24 270 IPR046341 -
Vifa2g01794 473 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Vifa2g01794 473 Gene3D Tetratricopeptide repeat domain 393 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01794 Vifa-Chr2 463713496 463717005 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g01794 SET 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01794 K11426 - gmx:100789518 742.265