Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01793 ATGGAGGAATTGCATAAAACCCTAAAGGATCGTGATTTAACCGTTCCCACCGTCCATGGAAAGGGTCGTTCTCTCTTCACTACTAGGGATTTTTACCCAGGAGAGGTGATTATTAGTCAAGAACCTTATGTTTGTGTTTCAACTCAGAAAAGGTGTGATGGTTGTTTCAGAACAACCAACCTAAGCAAGTGCTCACGTTGTCAAGTTGTTTGGTATTGTGGAACACCGTGTCAGAAATCGGCTTGGAGGTTGCATCGTCTTGAATGTGAAGCTCTTTCAAGGCTAGATGACCACAAGAGAAAATCTGTAACGCCGTCGATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAGTTGCAAAATGACAAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGATGCATTAGTGGCTCACATGTCTGACATTACAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAATGGCCTGAAATCAATATTAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCACATACCATTTGTGACGGTGAGTTGAGACCATTGGGAACTGGACTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCCGTATTGGTTTTTGAGGGAAGGATGGCATCAGTGCGTGCTTTACAGCACTTACCCAAGGGGACTGAGGTATTAATAAGTTATATAGAGACAGCAGGAAGCACTGTGATTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTGTTTGTCCTCTCTGCTCTAAAGTGTTAGTTTTGAAGGGTCAGTACGATGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGTACAACTGATGGAAAAGCATTCCAATGCCAAGAATGTGGGTTAATTAAAGACAAGGAAGAAATAAAGAAAATTGCAACTGAAATAAAATTGCTATCAGAAGAAGCTTCTAGTGCCGATTATCAAGAAGCTATATCTATATATAAAATGATAGAGAAACTGCAAACAAAGTTATATCATCCTTTCTCAATCTATTTGCTGCAAACACGAGAGACGATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGAGAAGCTTTAGCATATTGCAAAATGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGAAGACACAGAGGAAGCTGTTATATCATTGACCAAGGCTGTGGATATCCTAAGGATTACTCATGGTACAAATACTCCATTTGTTAAGGAACTTTTGATGATGTTGGAGGAAGCACGTGCAGAATTAACTTACAAGTCCTCTTCCAAAGAGGAGTAG 1434 0.3989 MEELHKTLKDRDLTVPTVHGKGRSLFTTRDFYPGEVIISQEPYVCVSTQKRCDGCFRTTNLSKCSRCQVVWYCGTPCQKSAWRLHRLECEALSRLDDHKRKSVTPSIRLMLKLYLRRKLQNDKIIPSTAMDNYKLVDALVAHMSDITEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDGELRPLGTGLYPVVSIINHSCLPNSVLVFEGRMASVRALQHLPKGTEVLISYIETAGSTVIRQKALKEQYLFTCVCPLCSKVLVLKGQYDDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLIKDKEEIKKIATEIKLLSEEASSADYQEAISIYKMIEKLQTKLYHPFSIYLLQTRETILKSLMKLEHWREALAYCKMTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLEDTEEAVISLTKAVDILRITHGTNTPFVKELLMMLEEARAELTYKSSSKEE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01793 477 Gene3D Tetratricopeptide repeat domain 397 476 IPR011990 GO:0005515
Vifa2g01793 477 Gene3D - 102 186 - -
Vifa2g01793 477 ProSitePatterns Zinc finger MYND-type signature. 52 89 IPR002893 -
Vifa2g01793 477 Pfam MYND finger 52 89 IPR002893 -
Vifa2g01793 477 Gene3D SET domain 24 270 IPR046341 -
Vifa2g01793 477 SUPERFAMILY TPR-like 343 447 IPR011990 GO:0005515
Vifa2g01793 477 Coils Coil 319 339 - -
Vifa2g01793 477 Pfam SET domain 22 243 IPR001214 GO:0005515
Vifa2g01793 477 SUPERFAMILY SET domain 13 243 IPR046341 -
Vifa2g01793 477 Gene3D - 51 101 - -
Vifa2g01793 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 18 463 - -
Vifa2g01793 477 ProSiteProfiles SET domain profile. 6 244 IPR001214 GO:0005515
Vifa2g01793 477 SMART set_7 11 250 IPR001214 GO:0005515
Vifa2g01793 477 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01793 Vifa-Chr2 463713496 463717005 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g01793 SET 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01793 K11426 - gmx:100789518 736.487