LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g01792	ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCCTCTTCACCGAACTTCGTCCGCAACTTTCAGGCCGCCTTGAAGCGCCACCGTCCTATCGGGCAATCCAATATCATTAGGCCAAGACGCACTATTCTTGTTAAATCACAAGATTCACTCACACGCCGAAACACCGATTCTGAAACTAGCACGGCTGTTAACCCTTCTCAAGATGCAAATGTTCACAGCAAAGTTCCTCAAGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAGTTTGTCTTCTTATATGAGTTCACTTGGATTCACAGAAATGGAATATGTTGAAGGCAACAACCAACATGAAGCGAGTGGATCCACCAATGATGATTCAAAGCAACCTAATGTTCAGAAGGCTGAGCCTGATGGAGGAGTAAGTTGCTCCATGTTGCCGAGGAGAGGTACGGTTATAAGGGATGATTTACACCAGTTCAGAAACTTTCTTAGTCAGCCAGCAACACAGTCTTCGGCGGTTGGACCTTCGTGTGCCACAACTACCTCGGTCAATTCAACTTCAGCTCCTATGATGAATTCAACGACCCGTTTGCATTCAGAAAGTGGCCTTAGCGTAGTGGCCAATCCTTTGGGAAAAGCTGAAAGAGTCATGGAACCAGCAAATATAGACACTAAAGCGAATAAATTATCAGTTGATAAGGCTGCAACTGCAGTGCAAACGTTTGACTCTTGTGTTGACTCTGAGTTGGCATGTAAAGGGAGTGACCAATCTAAGGAGCAACTAGAATGCATGTTAAAAGAAACTCACAATTCAAAATATGCTTCTTCTGATGGTGACAAGTTGATCAAAGGGGAAGAGGCCACAAATGTTGCCGGTGTACAGCCTCAGGCTCCGGTGCCCAAAACATCATCTTTGGACTTGAAGTCTGAATATTCTAAGTTAGAAAAACGAGAGAAGGCTGCGAGTAGTAAAGGTTCCTCAGTCGCTAAGAAAAGGACTTATGACCCAGATTTATTTTTCAAGGTCAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGAAGTGGCGGAAGCAGTGAGGTGCACAAGGTGATTTCATCAGATTGTAATATATTTGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATATGGATTTTGTCAAGAGATTGAGTATCTTAATAGGCTGAAAGGAAAGGACAATATTATACAGCTCATAGATTATGAGGTGACTGACAAAGCTTTGCTCGAAGAAGTTATGAAAGGTTCTCTTTGTAATAAGGATGGCCGTGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCACAGCAGTGGAAGAAGCTGGGTGAATCAAACAAAACCATAGATGAAAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATCGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTAATTGATTTCGGTATCGCCAAAGCAATAATGAGCGATACTACTAATATCCAACGGGAATCACAGGTCGGTACTCTGAGTTACATGTCTCCAGAAGCATTTATGTGTAATGAGACTGATGCAAACGGAAACATCATCAAGTGTGGTCGGCCATCAGATATCTGGTCTTTGGGGTGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATTACAGATCCCAAACATGAAATAACCTATGAACCACTTTCAAATCCATGGTTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCATGTACTAACTCATCCATCTTTATCCCAAGACCATTGCTGTAAATTTGTACAACTTGTTGCTGAACCTTGTGCATATGACCCCGAAGCATCCCAACTTTGTCATCAACTCCAACGTCTATTGGTTGATCCACTTGAGTCGGTAAATCACTCACTAAACTCAAGAGATCAACAAAGAACACTGTTGTCCAAACTTTCTGAACTCTGTATTCAGCTGCGGGAACGTTTGATGGGTACTGATATTCCATAG	2166	0.4234	MDGKSNLPIKPDSSSPNFVRNFQAALKRHRPIGQSNIIRPRRTILVKSQDSLTRRNTDSETSTAVNPSQDANVHSKVPQGANDEKAIELESLSSYMSSLGFTEMEYVEGNNQHEASGSTNDDSKQPNVQKAEPDGGVSCSMLPRRGTVIRDDLHQFRNFLSQPATQSSAVGPSCATTTSVNSTSAPMMNSTTRLHSESGLSVVANPLGKAERVMEPANIDTKANKLSVDKAATAVQTFDSCVDSELACKGSDQSKEQLECMLKETHNSKYASSDGDKLIKGEEATNVAGVQPQAPVPKTSSLDLKSEYSKLEKREKAASSKGSSVAKKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCNIFALKKIKLRGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLCNKDGRVKDDGYIYMVLEYGEIDLAHMLSQQWKKLGESNKTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPKHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLTHPSLSQDHCCKFVQLVAEPCAYDPEASQLCHQLQRLLVDPLESVNHSLNSRDQQRTLLSKLSELCIQLRERLMGTDIP	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g01792	721	FunFam	serine/threonine-protein kinase mph1 isoform X1	458	640	-	-
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	284	305	-	-
	Vifa2g01792	721	SUPERFAMILY	Protein kinase-like (PK-like)	338	644	IPR011009	-
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	111	142	-	-
	Vifa2g01792	721	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	491	503	IPR008271	GO:0004672\|GO:0006468
	Vifa2g01792	721	FunFam	serine/threonine-protein kinase mph1 isoform X2	337	424	-	-
	Vifa2g01792	721	Pfam	Protein kinase domain	344	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01792	721	ProSitePatterns	Protein kinases ATP-binding region signature.	350	372	IPR017441	GO:0005524
	Vifa2g01792	721	Gene3D	Phosphorylase Kinase; domain 1	337	424	-	-
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	48	76	-	-
	Vifa2g01792	721	Gene3D	Transferase(Phosphotransferase) domain 1	457	644	-	-
	Vifa2g01792	721	CDD	PKc_Mps1	342	637	IPR027084	-
	Vifa2g01792	721	SMART	serkin_6	344	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	164	197	-	-
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	48	82	-	-
	Vifa2g01792	721	PANTHER	MIXED LINEAGE PROTEIN KINASE	46	667	-	-
	Vifa2g01792	721	ProSiteProfiles	Protein kinase domain profile.	344	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g01792	721	MobiDBLite	consensus disorder prediction	111	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g01792	Vifa-Chr2	463707192	463712275	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g01792	350	637	MAP Kinase Kinase Kinase	AT4G08470	28.328	3.29e-24	105

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Vifa2g01792		Pkinase	2.8e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g01792	K08866		-	gmx:100788990	957.977