Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01791 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCCTCTTCACCGAACTTCGTCCGCAACTTTCAGGCCGCCTTGAAGCGCCACCGTCCTATCGCTACAGGGCAATCCAATATCATTAGGCCAAGACGCACTATTCTTGTTAAATCACAAGATTCACTCACACGCCGAAACACCGATTCTGAAACTAGCACGGCTGTTAACCCTTCTCAAGATGCAAATGTTCACAGCAAAGTTCCTCAAGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAGTTTGTCTTCTTATATGAGTTCACTTGGATTCACAGAAATGGAATATGTTGAAGGCAACAACCAACATGAAGCGAGTGGATCCACCAATGATGATTCAAAGCAACCTAATGTTCAGAAGGCTGAGCCTGATGGAGGAGTAAGTTGCTCCATGTTGCCGAGGAGAGGTACGGTTATAAGGGATGATTTACACCAGTTCAGAAACTTTCTTAGTCAGCCAGCAACACAGTCTTCGGCGGTTGGACCTTCGTGTGCCACAACTACCTCGGTCAATTCAACTTCAGCTCCTATGATGAATTCAACGACCCGTTTGCATTCAGAAAGTGGCCTTAGCGTAGTGGCCAATCCTTTGGGAAAAGCTGAAAGAGTCATGGAACCAGCAAATATAGACACTAAAGCGAATAAATTATCAGTTGATAAGGCTGCAACTGCAGTGCAAACGTTTGACTCTTGTGTTGACTCTGAGTTGGCATGTAAAGGGAGTGACCAATCTAAGGAGCAACTAGAATGCATGTTAAAAGAAACTCACAATTCAAAATATGCTTCTTCTGATGGTGACAAGTTGATCAAAGGGGAAGAGGCCACAAATGTTGCCGGTGTACAGCCTCAGGCTCCGGTGCCCAAAACATCATCTTTGGACTTGAAGTCTGAATATTCTAAGTTAGAAAAACGAGAGAAGGCTGCGAGTAGTAAAGGTTCCTCAGTCGCTAAGAAAAGGACTTATGACCCAGATTTATTTTTCAAGGTCAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGAAGTGGCGGAAGCAGTGAGGTGCACAAGGTGATTTCATCAGATTGTAATATATTTGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATATGGATTTTGTCAAGAGATTGAGTATCTTAATAGGCTGAAAGGAAAGGACAATATTATACAGCTCATAGATTATGAGGTGACTGACAAAGCTTTGCTCGAAGAAGTTATGAAAGGTTCTCTTTGTAATAAGGATGGCCGTGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCACAGCAGTGGAAGAAGCTGGGTGAATCAAACAAAACCATAGATGAAAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATCGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTAATTGATTTCGGTATCGCCAAAGCAATAATGAGCGATACTACTAATATCCAACGGGAATCACAGGTCGGTACTCTGAGTTACATGTCTCCAGAAGCATTTATGTGTAATGAGACTGATGCAAACGGAAACATCATCAAGTGTGGTCGGCCATCAGATATCTGGTCTTTGGGGTGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATTACAGATCCCAAACATGAAATAACCTATGAACCACTTTCAAATCCATGGTTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCATGTACTAACTCATCCATCTTTATCCCAAGACCATTGCTGTAAATTTGTACAACTTGTTGCTGAACCTTGTGCATATGACCCCGAAGCATCCCAACTTTGTCATCAACTCCAACGTCTATTGGTTGATCCACTTGAGTCGGTAAATCACTCACTAAACTCAAGAGATCAACAAAGAACACTGTTGTCCAAACTTTCTGAACTCTGTATTCAGCTGCGGGAACGTTTGATGGGTACTGATATTCCATAG 2172 0.4236 MDGKSNLPIKPDSSSPNFVRNFQAALKRHRPIATGQSNIIRPRRTILVKSQDSLTRRNTDSETSTAVNPSQDANVHSKVPQGANDEKAIELESLSSYMSSLGFTEMEYVEGNNQHEASGSTNDDSKQPNVQKAEPDGGVSCSMLPRRGTVIRDDLHQFRNFLSQPATQSSAVGPSCATTTSVNSTSAPMMNSTTRLHSESGLSVVANPLGKAERVMEPANIDTKANKLSVDKAATAVQTFDSCVDSELACKGSDQSKEQLECMLKETHNSKYASSDGDKLIKGEEATNVAGVQPQAPVPKTSSLDLKSEYSKLEKREKAASSKGSSVAKKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCNIFALKKIKLRGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLCNKDGRVKDDGYIYMVLEYGEIDLAHMLSQQWKKLGESNKTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPKHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLTHPSLSQDHCCKFVQLVAEPCAYDPEASQLCHQLQRLLVDPLESVNHSLNSRDQQRTLLSKLSELCIQLRERLMGTDIP 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01791 723 SMART serkin_6 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01791 723 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vifa2g01791 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vifa2g01791 723 MobiDBLite consensus disorder prediction 166 199 - -
Vifa2g01791 723 SUPERFAMILY Protein kinase-like (PK-like) 340 646 IPR011009 -
Vifa2g01791 723 MobiDBLite consensus disorder prediction 51 84 - -
Vifa2g01791 723 FunFam serine/threonine-protein kinase mph1 isoform X1 460 642 - -
Vifa2g01791 723 MobiDBLite consensus disorder prediction 113 128 - -
Vifa2g01791 723 Pfam Protein kinase domain 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01791 723 CDD PKc_Mps1 344 639 IPR027084 -
Vifa2g01791 723 Gene3D Phosphorylase Kinase; domain 1 339 426 - -
Vifa2g01791 723 ProSiteProfiles Protein kinase domain profile. 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01791 723 MobiDBLite consensus disorder prediction 286 307 - -
Vifa2g01791 723 FunFam serine/threonine-protein kinase mph1 isoform X2 339 426 - -
Vifa2g01791 723 MobiDBLite consensus disorder prediction 113 144 - -
Vifa2g01791 723 MobiDBLite consensus disorder prediction 51 78 - -
Vifa2g01791 723 PANTHER MIXED LINEAGE PROTEIN KINASE 48 669 - -
Vifa2g01791 723 Gene3D Transferase(Phosphotransferase) domain 1 459 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01791 Vifa-Chr2 463707192 463712275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01791 352 639 MAP Kinase Kinase Kinase AT4G08470 28.328 3.46e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vifa2g01791 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01791 K08866 - gmx:100788990 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01791 2 463707192 463712275 Vifa2g01791 2 463707192 463712275 ECH